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Display genomic neighborhood for:
genomic entity (gene/enhancer/marker)
genomic coordinates

  Chromosome 9

   GeneLoc map region (25,546,545 - 29,573,866 bp) around gene/enhancer/marker "C9orf72"

   Explanation:
   C9orf72 is located at 27,546,545-27,573,866 bp

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Start (bp)
Start (bp)
End (bp)
End (bp)
Strand
Strand
Gene
Gene
Enhancer ID
Enhancer ID
Unigene cluster
Unigene cluster
Entrez Gene Id
Entrez Gene Id
Ensembl Id
Ensembl Id
Description
Description
125541925 25570050 - LOC105375996
Exon structure


105375996

225562163 25562312

GH09E025562



325581177 25588569 - LOC105375997
Exon structure


105375997

425599480 25599654 + GC09P025599




525602043 25603527

GH09E025602



625675169 25675198 + PIR46793
Exon structure





725676389 25678858 - TUSC1
Exon structure

Hs.26268 286319 ENSG00000198680 tumor suppressor candidate 1
825676848 25679228

GH09E025676



925678860 25682963 + GC09P025678




1025716117 25716870

GH09E025716



1125780056 25812968 + LINC01241
Exon structure


101929582 ENSG00000236306 long intergenic non-protein coding RNA 1241
1225901132 25906945 - GC09M025901




1325903528 25920277 - GC09M025903




1425937911 25938437 + FAM71BP1
Exon structure


100421478 ENSG00000270683 family with sequence similarity 71 member B pseudogene 1
1525964303 25964452

GH09E025964



1626026243 26027006

GH09E026026



1726066675 26118408 + LOC100506422
Exon structure

Hs.533221 100506422 ENSG00000276759 Putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 (est)
1826077123 26077151 - PIR51514
Exon structure





1926107697 26107725 - PIR33130
Exon structure





2026152003 26152152

GH09E026152



2126170403 26170552

GH09E026170



2226210221 26210854

GH09E026210



2326242646 26245446

GH09E026242



2426245983 26247235

GH09E026245



2526259296 26263604

GH09E026259



2626264658 26266809

GH09E026264



2726293063 26293916

GH09E026293



2826308825 26308832

GH09E026308



2926310148 26310717

GH09E026310



3026324744 26325420

GH09E026324



3126326583 26326732

GH09E026326



3226391881 26391908 + PIR39726
Exon structure





3326408910 26408929

GH09E026408



3426410979 26426874 - LOC105375999
Exon structure


105375999

3526424111 26424137 - PIR55292
Exon structure





3626549020 26553697 - GC09M026549




3726603763 26604645

GH09E026603



3826624597 26624627 - GC09M026926




3926624597 26624627 - PIR46901
Exon structure





4026624670 26624701 - PIR52634
Exon structure





4126624670 26624701 - GC09M026936




4226625557 26625586 - PIR57937
Exon structure





4326625892 26625923 - PIR61193
Exon structure





4426626272 26626301 - PIR59115
Exon structure





4526626379 26626408 - PIR57045
Exon structure





4626626493 26626525 - PIR51664
Exon structure





4726626493 26626525 - GC09M026933




4826627037 26627069 - PIR39459
Exon structure





4926627037 26627069 - GC09M026922




5026627201 26627231 - GC09M026932




5126627201 26627231 - PIR46203
Exon structure





5226628729 26628758 - PIR59507
Exon structure





5326629301 26629331 - GC09M026920




5426629301 26629331 - PIR52741
Exon structure





5526630516 26630545 - PIR38811
Exon structure





5626631273 26631304 - PIR50039
Exon structure





5726631273 26631304 - GC09M026928




5826632332 26632362 - PIR33302
Exon structure





5926632332 26632362 - GC09M026934




6026632548 26632576 - PIR52716
Exon structure





6126633188 26633219 - PIR51585
Exon structure





6226633188 26633219 - GC09M026938




6326635355 26635385 - GC09M026919




6426635355 26635385 - PIR32092
Exon structure





6526636261 26636290 - PIR53047
Exon structure





6626636623 26636654 - GC09M026935




6726636623 26636654 - PIR36561
Exon structure





6826636783 26636814 - GC09M026930




6926636783 26636813 - GC09M026923




7026636783 26636814 - PIR35341
Exon structure





7126637180 26637210 - GC09M026925




7226637180 26637210 - PIR56526
Exon structure





7326637201 26637231 - GC09M026939




7426637201 26637231 - PIR62906
Exon structure





7526637243 26637392

GH09E026637



7626641094 26641125 - PIR47086
Exon structure





7726641094 26641125 - GC09M026921




7826641152 26641182 - PIR49951
Exon structure





7926641152 26641182 - GC09M026927




8026641233 26641269 - PIR60154
Exon structure





8126641273 26641303 - PIR55536
Exon structure





8226641273 26641303 - GC09M026940




8326641375 26641405 - GC09M026937




8426641375 26641405 - PIR46270
Exon structure





8526641858 26641888 - PIR47940
Exon structure





8626641858 26641888 - GC09M026931




8726642275 26642302 - PIR42563
Exon structure





8826642286 26642315 - PIR31389
Exon structure





8926642312 26642339 - PIR32243
Exon structure





9026642697 26644595 - ENSG00000279256
Exon structure



ENSG00000279256
9126642855 26642882 - PIR39744
Exon structure





9226643449 26643479 - PIR59969
Exon structure





9326643449 26643479 - GC09M026924




9426643910 26643940 - PIR43896
Exon structure





9526643910 26643940 - GC09M026929




9626656002 26656603

GH09E026656



9726670143 26670292

GH09E026670



9826676135 26681023 + LOC105369289
Exon structure


105369289

9926721263 26724931 - LOC105376000
Exon structure


105376000

10026723583 26723752

GH09E026723



10126742983 26743112

GH09E026742



10226745941 26748692

GH09E026745



10326746953 26786874 + ENSG00000254261
Exon structure



ENSG00000254261
10426790143 26790232

GH09E026790



10526796173 26796304 - ENSG00000252580
Exon structure



ENSG00000252580
10626801733 26805862 + ENSG00000253400
Exon structure



ENSG00000253400
10726812924 26837791 - GC09M026941




10826832798 26849452 - GC09M026942




10926833800 26834201

GH09E026833



11026840685 26892828 - CAAP1
Exon structure

Hs.178357 79886 ENSG00000120159 caspase activity and apoptosis inhibitor 1
11126880178 26880549 - ENSG00000232466
Exon structure



ENSG00000232466
11226889997 26893840

GH09E026889



11326892982 26934002 + GC09P026892




11426894103 26894252

GH09E026894



11526895678 26895970 + RN7SL100P
Exon structure


106480948 ENSG00000240306 RNA, 7SL, cytoplasmic 100, pseudogene
11626903370 26947470 - PLAA
Exon structure

Hs.27182 9373 ENSG00000137055 phospholipase A2 activating protein
11726936401 26937000

GH09E026936



11826941401 26941600

GH09E026941



11926945346 26948319

GH09E026945



12026947039 27066129 + IFT74
Exon structure

Hs.145402 80173 ENSG00000096872 intraflagellar transport 74
12126949400 26950558

GH09E026949



12226953839 26957699

GH09E026953



12326955780 26956307 - IFT74-AS1
Exon structure


101929602 ENSG00000234676 IFT74 antisense RNA 1
12426974695 26977659

GH09E026974



12526993136 27005693 - LRRC19
Exon structure

Hs.128071 64922 ENSG00000184434 leucine rich repeat containing 19
12627002926 27006957

GH09E027002



12727019097 27020447

GH09E027019



12827053092 27055000

GH09E027053



12927059113 27060277

GH09E027059



13027085860 27090666

GH09E027085



13127093974 27095567

GH09E027093



13227102630 27104728 + ENSG00000254396
Exon structure



ENSG00000254396
13327108747 27113012

GH09E027108



13427109141 27230178 + TEK
Exon structure

Hs.89640 7010 ENSG00000120156 TEK receptor tyrosine kinase
13527117143 27119853

GH09E027117



13627123781 27127233

GH09E027123



13727131863 27132012

GH09E027131



13827136722 27136748 - PIR32540
Exon structure





13927149856 27152623

GH09E027149



14027154530 27155776

GH09E027154



14127161926 27162573

GH09E027161



14227180913 27182342

GH09E027180



14327183800 27184052

GH09E027183



14427192400 27193000

GH09E027192



14527193785 27195401

GH09E027193



14627198287 27198401 + RNA5SP280
Exon structure


100873533 ENSG00000223162 RNA, 5S ribosomal pseudogene 280
14727210327 27210626 + RPL36AP34
Exon structure


100271513 ENSG00000232867 ribosomal protein L36a pseudogene 34
14827226863 27228110

GH09E027226



14927245684 27282793 - LINC00032
Exon structure

Hs.201554 158035
long intergenic non-protein coding RNA 32
15027261523 27261672

GH09E027261



15127261763 27261912

GH09E027262



15227276201 27276600

GH09E027276



15327280601 27281000

GH09E027280



15427281201 27281400

GH09E027281



15527284654 27297139 - EQTN
Exon structure

Hs.163070 54586 ENSG00000120160 equatorin
15627292903 27294454

GH09E027292



15727302943 27304038

GH09E027302



15827308823 27308992

GH09E027308



15927325209 27529852 - MOB3B
Exon structure

Hs.369022; Hs.690014 79817 ENSG00000120162 MOB kinase activator 3B
16027332783 27334059

GH09E027332



16127335802 27342555

GH09E027335



16227348801 27349400

GH09E027348



16327351001 27354601

GH09E027351



16427356601 27356800

GH09E027357



16527356823 27356972

GH09E027356



16627360585 27363202

GH09E027360



16727365018 27373527

GH09E027365



16827374230 27378944 - GC09M027375




16927376248 27388665

GH09E027376



17027391734 27397563 + ENSG00000237734
Exon structure



ENSG00000237734
17127392481 27396602

GH09E027392



17227399890 27401990

GH09E027399



17327406809 27409164

GH09E027406



17427412699 27415359

GH09E027412



17527417292 27417950

GH09E027417



17627420960 27422368

GH09E027420



17727422443 27422592

GH09E027422



17827423861 27431032

GH09E027423



17927431225 27432800

GH09E027431



18027433223 27435008

GH09E027433



18127435610 27436025

GH09E027435



18227436383 27436592

GH09E027436



18327437243 27444044

GH09E027437



18427450853 27452079

GH09E027450



18527453257 27454990

GH09E027453



18627455705 27458513

GH09E027455



18727458780 27466034

GH09E027458



18827466684 27466923

GH09E027466



18927467601 27467800

GH09E027467



19027468743 27468772

GH09E027470



19127468863 27468892

GH09E027468



19227469801 27472600

GH09E027469



19327473200 27473800

GH09E027473



19427474201 27478062

GH09E027474



19527479266 27480772

GH09E027479



19627482233 27483098

GH09E027482



19727485002 27485599

GH09E027485



19827486427 27486669

GH09E027486



19927487330 27491999

GH09E027487



20027496255 27498430 - LOC105376001
Exon structure


105376001

20127497744 27500471

GH09E027497



20227501601 27501800

GH09E027501



20327514643 27514792

GH09E027514



20427518293 27521173

GH09E027518



20527524314 27526498 + IFNK
Exon structure

Hs.591083 56832 ENSG00000147896 interferon kappa
20627527075 27530434

GH09E027527



20727534401 27534600

GH09E027534



20827535903 27536072

GH09E027535



20927538509 27541317

GH09E027538



21027546545 27573866 - C9orf72
Exon structure

Hs.493639 203228 ENSG00000147894 chromosome 9 open reading frame 72
21127548203 27548412

GH09E027548



21227548623 27549505

GH09E027549



21327563401 27566830

GH09E027563



21427569363 27569792

GH09E027569



21527571350 27574791

GH09E027571



21627581905 27583023

GH09E027581



21727586001 27587200

GH09E027586



21827587802 27588800

GH09E027587



21927589601 27590000

GH09E027589



22027590692 27591636

GH09E027590



22127598801 27600665

GH09E027598



22227601401 27602603

GH09E027601



22327602802 27602852

GH09E027602



22427607988 27610967 - CTAGE12P
Exon structure


392298 ENSG00000215441 CTAGE family member 12, pseudogene
22527622601 27623400

GH09E027622



22627625877 27627327

GH09E027625



22727634983 27635172

GH09E027634



22827645001 27646000

GH09E027645



22927654633 27655800

GH09E027654



23027658985 27659270

GH09E027658



23127662783 27662932

GH09E027662



23227663537 27665760

GH09E027663



23327664332 27684227 + LOC105376002
Exon structure


105376002

23427676771 27676800 - PIR63026
Exon structure





23527690202 27690799

GH09E027690



23627700601 27700800

GH09E027701



23727700805 27702400

GH09E027700



23827726173 27726600

GH09E027726



23927733801 27733933

GH09E027733



24027749565 27750942

GH09E027749



24127765363 27765512

GH09E027765



24227766103 27766252

GH09E027766



24327771076 27772981

GH09E027771



24427784932 27786763

GH09E027784



24527798883 27800077

GH09E027798



24627829276 27844481 + ENSG00000260390
Exon structure



ENSG00000260390
24727855942 27873581 + GC09P027855




24827856163 27856312

GH09E027856



24927870523 27870592

GH09E027870



25027937617 29213981 - LINGO2
Exon structure

Hs.745029 158038 ENSG00000174482 leucine rich repeat and Ig domain containing 2
25127937617 27944497 - ENSG00000260412
Exon structure



ENSG00000260412
25227943692 27943993

GH09E027943



25327948078 27948748 - GC09M027948




25428050519 28052527

GH09E028050



25528051940 28056085 + GC09P028051




25628092602 28094511

GH09E028092



25728117335 28117799

GH09E028117



25828148011 28149236 + LOC646700
Exon structure


646700 ENSG00000229060
25928154769 28155859

GH09E028154



26028213103 28213252

GH09E028213



26128234983 28235132

GH09E028234



26228259860 28260258

GH09E028259



26328271340 28272861

GH09E028271



26428365595 28365786

GH09E028365



26528539494 28539762

GH09E028539



26628539715 28601495 + LOC105376004
Exon structure


105376004

26728598664 28599292 - KCTD10P1
Exon structure


100422230 ENSG00000224955 potassium channel tetramerization domain containing 10 pseudogene 1
26828619948 28657726 + LOC105376003
Exon structure


105376003

26928634170 28675172 + GC09P028634




27028649801 28650022

GH09E028649



27128650143 28650440

GH09E028651



27228650503 28650652

GH09E028650



27328688363 28688392

GH09E028688



27428768005 28768361

GH09E028768



27528778883 28780035

GH09E028778



27628810620 28811022

GH09E028810



27728820272 28822219

GH09E028820



27828863626 28863706 - MIR876
Exon structure


100126310 ENSG00000215966 microRNA 876
27928867876 28867948 - GC09M028867




28028888839 28888973 + GC09P028888




28128888879 28888955 - MIR873
Exon structure


100126316 ENSG00000215939 microRNA 873
28228915313 28915964

GH09E028915



28328916463 28916612

GH09E028916



28428922943 28923092

GH09E028922



28528923443 28923592

GH09E028923



28628924903 28925052

GH09E028924



28728925323 28925629

GH09E028925



28828927823 28927972

GH09E028927



28928928680 28928798

GH09E028928



29028956403 28957256

GH09E028956



29128969218 28972148

GH09E028969



29229078443 29078592

GH09E029078



29329173530 29176043 + GC09P029173




29429189943 29189974 + PIR41773
Exon structure





29529211201 29214799

GH09E029211



29629212336 29216165 - GC09M029212




29729214321 29220141 + GC09P029215




29829214836 29215400

GH09E029214



29929254075 29254426 - ENSG00000230276
Exon structure



ENSG00000230276
30029317833 29318952 + PDK1P1
Exon structure


100421194 ENSG00000277646 pyruvate dehydrogenase kinase 1 pseudogene 1
30129325187 29326527

GH09E029325



30229332463 29333336

GH09E029332



30329354730 29370629 - GC09M029354




30429511803 29511952

GH09E029511



30529513603 29513712

GH09E029513



30629513745 29513752

GH09E029515



30729513963 29514772

GH09E029514