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Weizmann Institute of Science

GeneAnnot: Version 2.2
Release: May, 2012
Affymetrix GeneChips
HG-U133 Plus2

Synchronized with
GeneCards Version 3.08

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What's new on the GeneAnnot web site

May, 2012: Release of version 2.2

  • Synchronized with GeneCards v3.08.

October, 2011: Release of version 2.1

  • Synchronized with GeneCards v3.06.

September, 2010: Release of version 2.0

  • Synchronized with GeneCards v3.03.

February, 2008: Release of version 1.7

  • Synchronized with GeneCards v2.38.

November, 2007: Release of custom CDFs based on GeneAnnot

  • Custom CDFs based on GeneAnnot and related Bioconductor packages for the analysis of Affymetrix GeneChips are now available.
    Click here for more details.

October, 2007: Release of version 1.6

  • Synchronized with GeneCards v2.37.

April, 2007: Release of version 1.5

  • Synchronized with GeneCards v2.36.

November, 2006: Release of version 1.4a

  • Synchronized with GeneCards v2.35.

April, 2006: Release of version 1.3

  • Synchronized with GeneCards v2.34.

December, 2005: Release of version 1.2

  • Synchronized with GeneCards v2.33.

July, 2005: Release of version 1.1

  • Synchronized with GeneCards v2.32.
  • Compatible with Entrez Gene.
  • GeneAnnot's information for probe-sets from Affymetrix GeneChips HG-U133 and HG-U133 Plus 2.0 now appear in GeneCards expression section of relevant genes.

March, 2005: Release of version 1.0

  • Additional search options:
    • Search GeneAnnot by Gene Symbol.
    • Search GeneAnnot by GeneCards ID.
    • Search GeneAnnot via ANY of the Affymetrix versions (HG-U95, HG-U133 and/or HG-U133 Plus 2.0).

  • New look to match the GeneCards display:
    • Added documentation about the scoring system and annotation qualities imbedded within the results page.
    • Updated the GeneAnnot Overview page to now include a graphical example of score calculation.
    • Easier navigation.
    • Fixed bugs in the display of Affymetrix annotation.

January 15, 2005: Release of version 0.6

28 July 2004: Release of version 0.5

  • Synchronized with GeneCards v2.30
  • GeneAnnot published article :
    Chalifa-Caspi, V., Yanai, I., Ophir, R., Rosen, N., Shmoish, M., Benjamin-Rodrig, H., Iny Stein, T., Shmueli, O., Safran, M. and Lancet, D. GeneAnnot: comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes. Bioinformatics 20, 9: 1457-1458 (2004). PUBMED
  • Each probe-set query now offers a link to a query of the probe-set in GeneTide.

2 March 2004: Release of version 0.4

  • Synchronized with GeneCards v2.29
  • GeneAnnot published article :
    GeneAnnot: Interfacing GeneCards with high-throughput gene expression compendia Chalifa-Caspi V.; Shmueli O.; Benjamin-Rodrig H.; Rosen N.; Shmoish M.; Yanai I.; Ophir R.; Kats P.; Safran M.; Lancet D. Briefings in Bioinformatics, December 2003, vol. 4, no. 4, pp. 349-360(12) Henry Stewart Publications. PUBMED
  • Fixed bugs that allowed genomic sequences rather than only RNA serve as evidence for associating a probe-set with a gene.
  • Fixed bugs in display mechanism

5 November 2003: Release of version 0.3

  • Fixed bugs in probe-set to Gene Specificity and Sensitivity calculations
  • Added support for probe-sets with various numbers of probes
  • GeneAnnot hyperlink in each GeneCards expression box now leads to a list of probe-sets associated with that gene

5 May 2003: Release of version 0.2

  • GeneAnnot web site is live