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Weizmann Institute of Science

Version: v1.3
Release:
24 April 2007
Synchronized with: GeneCards v2.36
GeneLoc v2.36
GeneAnnot v1.5


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 GeneTide is an automated system for human transcripts (mRNA & ESTs) annotation and elucidation of
 de-novo genes. (
More about GeneTide.)

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Gene Association Results Summary for AW276493 [help]

GC Gene GC ID UniGene DoTS AceView GeneAnnot BGL Co Uq Score Rank
JMJD5
GC16P027123
+
+
+
-
+
0.80
1.00
0.91
1


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GeneTide Query Results for the EST AW276493 [help]

  General links [help]

Similar transcripts

FASTA

UCSC Genome Browser

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  Validation Level [help]

Validated by RepeatMasker Validation Score
UniGene DoTS AceView
+
+
+
repeat_name
repeat_class
repeat_family
L1ME3A
LINE
L1

3 - High

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  Resources Annotation [help]

Resource

Data

UniGene

unigene_id
locuslink_id
gc_id
gene_symbol
Hs.145717
79831
GC16P027123
JMJD5

DoTs

dots_id
locuslink_id
gc_id
gene_symbol
DT.40305942
79831
GC16P027123
JMJD5

AceView

av_symbol
locuslink_id
gc_id
gene_symbol
FLJ13798
79831
GC16P027123
JMJD5

GeneAnnot

---

BLAT
GeneLoc

LocusLink_hit
Ensembl_hit
gc_id
gene_symbol
+
+
GC16P027123
JMJD5

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  Genomic location based data [help]

Genomic Location

Chr Str
orientation
chrom_start
chrom_end
cdna_start
cdna_end
length
matches
chr16
-
unknown
27232629
27233039
7
417
410
408

Gene Territory

Str
start
end
gc_id
gene_symbol
+
27122317
27140544
GC16P027123
JMJD5

Splice Site
Known

NO

Repeat Masker

chrom
Str
start
end
repName
repClass
repFamily
16
-
27140130
27140540
L1ME3A
LINE
L1


Current team:

Alexandra Sirota, Asaf Madi, Tsippi Iny Stein, Marilyn Safran (Head of the GeneCards project) and Doron Lancet (principal investigator).

Past team:

Maxim Shklar (founder), Shany Ron, Ohad Greenshpan.