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Weizmann Institute of Science

Version: v1.3
Release:
24 April 2007
Synchronized with: GeneCards v2.36
GeneLoc v2.36
GeneAnnot v1.5


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 GeneTide is an automated system for human transcripts (mRNA & ESTs) annotation and elucidation of
 de-novo genes. (
More about GeneTide.)

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GeneTide Query Results for U95 Probe set 42080_at which was created from Genbank accession AA192415


Gene Association Results Summary for AA192415 [help]

GC Gene GC ID UniGene DoTS AceView GeneAnnot BGL Co Uq Score Rank
IFT88
GC13P020039
-
-
+
+
-
0.40
1.00
0.76
1


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GeneTide Query Results for the EST AA192415 [help]

  General links [help]

Similar transcripts

FASTA

UCSC Genome Browser

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  Validation Level [help]

Validated by RepeatMasker Validation Score
UniGene DoTS AceView
-
+
+
repeat_name
repeat_class
repeat_family
AluSx
SINE
Alu

2 - Medium

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  Resources Annotation [help]

Resource

Data

UniGene

---

DoTs

dots_id
locuslink_id
gc_id
gene_symbol
DT.92352829



AceView

av_symbol
locuslink_id
gc_id
gene_symbol
TTC10
8100
GC13P020039
IFT88

GeneAnnot

gb_id
probe_set
resource
gc_id
gene_symbol
AA192415
42080_at
1.probe_set_to_gc
GC13P020039
IFT88

BLAT
GeneLoc

---

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  Genomic location based data [help]

Genomic Location

Chr Str
orientation
chrom_start
chrom_end
cdna_start
cdna_end
length
matches
chr13
-
unknown
21216612
21217035
38
465
427
284

Gene Territory

Str
start
end
gc_id
gene_symbol
+
20038585
20163576
GC13P020039
IFT88

Splice Site
Known

NO

Repeat Masker

chrom
Str
start
end
repName
repClass
repFamily
13
+
20114653
20114666
AluSx
SINE
Alu
13
+
20114612
20114627
AluSx
SINE
Alu
13
+
20114679
20114691
AluSx
SINE
Alu
13
+
20114667
20114679
AluSx
SINE
Alu
13
+
20114700
20115035
AluSx
SINE
Alu
13
+
20114628
20114642
AluSx
SINE
Alu
13
+
20114694
20114700
AluSx
SINE
Alu


Current team:

Alexandra Sirota, Asaf Madi, Tsippi Iny Stein, Marilyn Safran (Head of the GeneCards project) and Doron Lancet (principal investigator).

Past team:

Maxim Shklar (founder), Shany Ron, Ohad Greenshpan.