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Weizmann Institute of Science

Version: v1.3
Release:
24 April 2007
Synchronized with: GeneCards v2.36
GeneLoc v2.36
GeneAnnot v1.5


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 GeneTide is an automated system for human transcripts (mRNA & ESTs) annotation and elucidation of
 de-novo genes. (
More about GeneTide.)

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GeneTide Query Results for U95 Probe set 35980_at which was created from Genbank accession AB011153


Gene Association Results Summary for AB011153 [help]

GC Gene GC ID UniGene DoTS AceView GeneAnnot BGL Co Uq Score Rank
PLCB1
GC20P008061
+
+
+
+
+
1.00
0.87
0.94
1
ENSG00000209693
GC20P008497
-
-
-
-
+
0.20
0.07
0.15
2
ENSG00000201348
GC20P008760
-
-
-
-
+
0.20
0.07
0.15
2


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GeneTide Query Results for the mRNA AB011153 [help]

  General links [help]

Similar transcripts

FASTA

UCSC Genome Browser

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  Validation Level [help]

Validated by RepeatMasker Validation Score
UniGene DoTS AceView
+
+
+
repeat_name
repeat_class
repeat_family
AT
rich
Low
GC
rich
Low

3 - High

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  Resources Annotation [help]

Resource

Data

UniGene

unigene_id
locuslink_id
gc_id
gene_symbol
Hs.431173
23236
GC20P008061
PLCB1

DoTs

dots_id
locuslink_id
gc_id
gene_symbol
DT.312378
23236
GC20P008061
PLCB1

AceView

av_symbol
locuslink_id
gc_id
gene_symbol
PLCB1
23236
GC20P008061
PLCB1

GeneAnnot

gb_id
probe_set
resource
gc_id
gene_symbol
AB011153
35980_at
1.probe_set_to_gc
GC20P008061
PLCB1

BLAT
GeneLoc

LocusLink_hit
Ensembl_hit
gc_id
gene_symbol
+
+
GC20P008061
PLCB1
+
-
GC20P008760
ENSG00000201348
+
-
GC20P008497
ENSG00000209693

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  Genomic location based data [help]

Genomic Location

Chr Str
orientation
chrom_start
chrom_end
cdna_start
cdna_end
length
matches
chr20
+
unknown
8112911
8865550
0
7092
7092
7027

Gene Territory

Str
start
end
gc_id
gene_symbol
+
8060908
8813547
GC20P008061
PLCB1
+
8496292
8496381
GC20P008497
ENSG00000209693
+
8759833
8760040
GC20P008760
ENSG00000201348

Splice Site
Known

YES

Repeat Masker

chrom
Str
start
end
repName
repClass
repFamily
20
+
8060911
8061397
GC
rich
Low
20
+
8810268
8813550
AT
rich
Low


Current team:

Alexandra Sirota, Asaf Madi, Tsippi Iny Stein, Marilyn Safran (Head of the GeneCards project) and Doron Lancet (principal investigator).

Past team:

Maxim Shklar (founder), Shany Ron, Ohad Greenshpan.