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Weizmann Institute of Science

Version: v1.3
Release:
24 April 2007
Synchronized with: GeneCards v2.36
GeneLoc v2.36
GeneAnnot v1.5


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 GeneTide is an automated system for human transcripts (mRNA & ESTs) annotation and elucidation of
 de-novo genes. (
More about GeneTide.)

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GeneTide Query Results for U95 Probe set 34284_at which was created from Genbank accession U20362


Gene Association Results Summary for U20362 [help]

GC Gene GC ID UniGene DoTS AceView GeneAnnot BGL Co Uq Score Rank
IFT88
GC13P020039
+
+
+
+
+
1.00
0.87
0.94
1
LOC727991
GC13P020078
-
-
-
-
+
0.20
0.07
0.15
2
ENSG00000200145
GC13P020085
-
-
-
-
+
0.20
0.07
0.15
2


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GeneTide Query Results for the mRNA U20362 [help]

  General links [help]

Similar transcripts

FASTA

UCSC Genome Browser

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  Validation Level [help]

Validated by RepeatMasker Validation Score
UniGene DoTS AceView
+
+
+
repeat_name
repeat_class
repeat_family
C-rich
Low
complexity

3 - High

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  Resources Annotation [help]

Resource

Data

UniGene

unigene_id
locuslink_id
gc_id
gene_symbol
Hs.187376
8100
GC13P020039
IFT88

DoTs

dots_id
locuslink_id
gc_id
gene_symbol
DT.454660
8100
GC13P020039
IFT88

AceView

av_symbol
locuslink_id
gc_id
gene_symbol
TTC10
8100
GC13P020039
IFT88

GeneAnnot

gb_id
probe_set
resource
gc_id
gene_symbol
U20362
34284_at
1.probe_set_to_gc
GC13P020039
IFT88

BLAT
GeneLoc

LocusLink_hit
Ensembl_hit
gc_id
gene_symbol
+
+
GC13P020039
IFT88
+
-
GC13P020085
ENSG00000200145
-
+
GC13P020078
LOC727991

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  Genomic location based data [help]

Genomic Location

Chr Str
orientation
chrom_start
chrom_end
cdna_start
cdna_end
length
matches
chr13
+
unknown
21141207
21265501
0
2853
2853
2786

Gene Territory

Str
start
end
gc_id
gene_symbol
+
20038585
20163576
GC13P020039
IFT88
+
20078923
20080294
GC13P020078
LOC727991
+
20084300
20084477
GC13P020085
ENSG00000200145

Splice Site
Known

YES

Repeat Masker

chrom
Str
start
end
repName
repClass
repFamily
13
+
20039207
20039230
C-rich
Low
complexity
13
+
20039261
20039273
C-rich
Low
complexity
13
+
20039231
20039260
C-rich
Low
complexity


Current team:

Alexandra Sirota, Asaf Madi, Tsippi Iny Stein, Marilyn Safran (Head of the GeneCards project) and Doron Lancet (principal investigator).

Past team:

Maxim Shklar (founder), Shany Ron, Ohad Greenshpan.