GeneTide V1.3

an academic website of the

in association with

Home

Overview

Multiple Query

EGC List

Sources

Publications

GeneTide Team

What's New

Weizmann Institute of Science

Version: v1.3
Release:
24 April 2007
Synchronized with: GeneCards v2.36
GeneLoc v2.36
GeneAnnot v1.5

Contact us

GeneTide is an automated system for human transcripts (mRNA & ESTs) annotation and elucidation of
de-novo genes. (More about GeneTide.)

Search GeneTide

GeneTide Query Results for U95 Probe set 32794_g_at which was created from Genbank accession X00437

Gene Association Results Summary for X00437

GC Gene	GC ID	UniGene	DoTS	AceView	GeneAnnot	BGL	Co	Uq	Score	Rank
TRBC1	GC07P141672	-	-	+	+	+	0.60	0.06	0.43	1
TRBV19	GC07P141671	-	-	+	+	+	0.60	0.06	0.43	1
PRSS1	GC07P142136	+	-	-	-	+	0.40	0.26	0.34	2
TRBV3-1	GC07P141654	-	-	+	+	-	0.40	0.06	0.29	3
TRBV7-2	GC07P141729	-	-	+	+	-	0.40	0.06	0.29	3
TRBV5-4	GC07P141833	-	-	+	+	-	0.40	0.06	0.29	3
TRBV18	GC07P142022	-	-	+	-	+	0.40	0.01	0.28	4
TRBV15	GC07P142009	-	-	+	-	+	0.40	0.01	0.28	4
TRBJ1-2	GC07P142219	-	-	+	-	+	0.40	0.01	0.28	4
TRBJ1-1	GC07P142201	-	-	+	-	+	0.40	0.01	0.28	4
TRBV29-1	GC07P142129	-	-	+	-	+	0.40	0.01	0.28	4
TRBV28	GC07P142108	-	-	+	-	+	0.40	0.01	0.28	4
TRBJ1-3	GC07P142195	-	-	+	-	+	0.40	0.01	0.28	4
TRBJ1-6	GC07P142196	-	-	+	-	+	0.40	0.01	0.28	4
TRBV21-1	GC07P141922	-	-	+	-	+	0.40	0.01	0.28	4
TRBJ1-5	GC07P142202	-	-	+	-	+	0.40	0.01	0.28	4
TRBV12-3	GC07P141949	-	-	+	-	+	0.40	0.01	0.28	4
TRBJ1-4	GC07P142223	-	-	+	-	+	0.40	0.01	0.28	4
TRBC2	GC07P142208	-	-	+	-	-	0.20	0.01	0.14	5
TRBJ2-6	GC07P142213	-	-	+	-	-	0.20	0.01	0.14	5
TRBV7-3	GC07P141753	-	-	+	-	-	0.20	0.01	0.14	5
TRBJ2-3	GC07P142215	-	-	+	-	-	0.20	0.01	0.14	5
TRBJ2-2	GC07P142217	-	-	+	-	-	0.20	0.01	0.14	5
TRBV8-2	GC07P141754	-	-	+	-	-	0.20	0.01	0.14	5
TRBJ2-1	GC07P142218	-	-	+	-	-	0.20	0.01	0.14	5
TRBV13	GC07P141927	-	-	+	-	-	0.20	0.01	0.14	5
TRBV5-5	GC07P141851	-	-	+	-	-	0.20	0.01	0.14	5
TRBV5-6	GC07P141869	-	-	+	-	-	0.20	0.01	0.14	5
TRBJ2-5	GC07P142204	-	-	+	-	-	0.20	0.01	0.14	5
TRBJ2-2P	GC07P142216	-	-	+	-	-	0.20	0.01	0.14	5
TRBJ2-7	GC07P142205	-	-	+	-	-	0.20	0.01	0.14	5
ENSG00000202138	GC07P142055	-	-	-	-	+	0.20	0.01	0.14	6
ENSG00000208325	GC07P142054	-	-	-	-	+	0.20	0.01	0.14	6
TRBV25-1	GC07P142058	-	-	-	-	+	0.20	0.01	0.14	6
TRBVB	GC07P142098	-	-	-	-	+	0.20	0.01	0.14	6
TRBV12-4	GC07P141952	-	-	-	-	+	0.20	0.01	0.14	6
PRSS2	GC07P142167	-	-	-	-	+	0.20	0.01	0.14	6
TRY6	GC07P142161	-	-	-	-	+	0.20	0.01	0.14	6
TRBV23-1	GC07P142034	-	-	-	-	+	0.20	0.01	0.14	6
TRBV22	GC07P142031	-	-	-	-	+	0.20	0.01	0.14	6
TRBD1	GC07P142194	-	-	-	-	+	0.20	0.01	0.14	6
TRBV20-1	GC07P142025	-	-	-	-	+	0.20	0.01	0.14	6
TRBV17	GC07P142024	-	-	-	-	+	0.20	0.01	0.14	6
TRBV27	GC07P142102	-	-	-	-	+	0.20	0.01	0.14	6
TRY5	GC07P142147	-	-	-	-	+	0.20	0.01	0.14	6
TRBVA	GC07P142068	-	-	-	-	+	0.20	0.01	0.14	6
TRBV12-5	GC07P142028	-	-	-	-	+	0.20	0.01	0.14	6
ENSG00000208328	GC07P142052	-	-	-	-	+	0.20	0.01	0.14	6
ENSG00000204983	GC07P142158	-	-	-	-	+	0.20	0.01	0.14	6
TRBV24-1	GC07P142043	-	-	-	-	+	0.20	0.01	0.14	6
TRBV16	GC07P142026	-	-	-	-	+	0.20	0.01	0.14	6
TRY7	GC07P142168	-	-	-	-	+	0.20	0.01	0.14	6
TRBV26	GC07P142083	-	-	-	-	+	0.20	0.01	0.14	6
ENSG00000204981	GC07P142170	-	-	-	-	+	0.20	0.01	0.14	6
TRBV14	GC07P142027	-	-	-	-	+	0.20	0.01	0.14	6
TRB@	GC07P141648	-	-	-	-	+	0.20	0.01	0.14	6

GeneTide Query Results for the mRNA X00437

General links

Similar transcripts	FASTA	UCSC Genome Browser

Validation Level

Validated by

RepeatMasker

Validation Score

UniGene	DoTS	AceView
+	+	+

---

4 - Very High

Resources Annotation

Resource

Data

UniGene

unigene_id	locuslink_id	gc_id	gene_symbol
Hs.622865	5644	GC07P142136	PRSS1

DoTs

dots_id	locuslink_id	gc_id	gene_symbol
DT.449550

AceView

av_symbol	locuslink_id	gc_id	gene_symbol
TRBVandTRBJ_	28638	GC07P142208	TRBC2
TRBVandTRBJ_	28635	GC07P142201	TRBJ1-1
TRBVandTRBJ_	28634	GC07P142219	TRBJ1-2
TRBVandTRBJ_	28633	GC07P142195	TRBJ1-3
TRBVandTRBJ_	28632	GC07P142223	TRBJ1-4
TRBVandTRBJ_	28631	GC07P142202	TRBJ1-5
TRBVandTRBJ_	28630	GC07P142196	TRBJ1-6
TRBVandTRBJ_	28629	GC07P142218	TRBJ2-1
TRBVandTRBJ_	28628	GC07P142217	TRBJ2-2
TRBVandTRBJ_	28627	GC07P142216	TRBJ2-2P
TRBVandTRBJ_	28626	GC07P142215	TRBJ2-3
TRBVandTRBJ_	28624	GC07P142204	TRBJ2-5
TRBVandTRBJ_	28623	GC07P142213	TRBJ2-6
TRBVandTRBJ_	28622	GC07P142205	TRBJ2-7
TRBVandTRBJ_	28619	GC07P141654	TRBV3-1
TRBVandTRBJ_	28611	GC07P141833	TRBV5-4
TRBVandTRBJ_	28610	GC07P141851	TRBV5-5
TRBVandTRBJ_	28609	GC07P141869	TRBV5-6
TRBVandTRBJ_	28596	GC07P141729	TRBV7-2
TRBVandTRBJ_	28595	GC07P141753	TRBV7-3
TRBVandTRBJ_	28587	GC07P141754	TRBV8-2
TRBVandTRBJ_	28577	GC07P141949	TRBV12-3
TRBVandTRBJ_	28574	GC07P141927	TRBV13
TRBVandTRBJ_	28572	GC07P142009	TRBV15
TRBVandTRBJ_	28569	GC07P142022	TRBV18
TRBVandTRBJ_	28568	GC07P141671	TRBV19
TRBVandTRBJ_	28566	GC07P141922	TRBV21-1
TRBVandTRBJ_	28559	GC07P142108	TRBV28
TRBVandTRBJ_	28558	GC07P142129	TRBV29-1
TRBVandTRBJ_	28639	GC07P141672	TRBC1

GeneAnnot

gb_id	probe_set	resource	gc_id	gene_symbol
X00437	32793_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32793_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32793_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32793_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32794_g_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141672	TRBC1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32794_g_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32794_g_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32794_g_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32794_g_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32794_g_at	1.probe_set_to_gc	GC07P141671	TRBV19
X00437	32794_g_at	1.probe_set_to_gc	GC07P141654	TRBV3-1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141654	TRBV3-1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141654	TRBV3-1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141654	TRBV3-1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141654	TRBV3-1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141654	TRBV3-1
X00437	32794_g_at	1.probe_set_to_gc	GC07P141729	TRBV7-2
X00437	32794_g_at	1.probe_set_to_gc	GC07P141729	TRBV7-2
X00437	32794_g_at	1.probe_set_to_gc	GC07P141729	TRBV7-2
X00437	32794_g_at	1.probe_set_to_gc	GC07P141729	TRBV7-2
X00437	32794_g_at	1.probe_set_to_gc	GC07P141729	TRBV7-2
X00437	32794_g_at	1.probe_set_to_gc	GC07P141729	TRBV7-2
X00437	32794_g_at	1.probe_set_to_gc	GC07P141833	TRBV5-4
X00437	32794_g_at	1.probe_set_to_gc	GC07P141833	TRBV5-4
X00437	32794_g_at	1.probe_set_to_gc	GC07P141833	TRBV5-4
X00437	32794_g_at	1.probe_set_to_gc	GC07P141833	TRBV5-4
X00437	32794_g_at	1.probe_set_to_gc	GC07P141833	TRBV5-4
X00437	32794_g_at	1.probe_set_to_gc	GC07P141833	TRBV5-4

BLAT
GeneLoc

LocusLink_hit	Ensembl_hit	gc_id	gene_symbol
-	+	GC07P141922	TRBV21-1
+	+	GC07P142136	PRSS1
-	+	GC07P142129	TRBV29-1
-	+	GC07P141672	TRBC1
+	-	GC07P142052	ENSG00000208328
-	+	GC07P142026	TRBV16
-	+	GC07P142168	TRY7
-	+	GC07P142195	TRBJ1-3
-	+	GC07P142196	TRBJ1-6
-	+	GC07P142147	TRY5
+	-	GC07P142055	ENSG00000202138
-	+	GC07P141671	TRBV19
+	-	GC07P142158	ENSG00000204983
-	+	GC07P142027	TRBV14
+	+	GC07P142167	PRSS2
-	+	GC07P141952	TRBV12-4
-	+	GC07P142161	TRY6
-	+	GC07P142098	TRBVB
-	+	GC07P142102	TRBV27
-	+	GC07P142028	TRBV12-5
-	+	GC07P142031	TRBV22
-	+	GC07P142108	TRBV28
+	-	GC07P142170	ENSG00000204981
-	+	GC07P142009	TRBV15
-	+	GC07P142024	TRBV17
-	+	GC07P142202	TRBJ1-5
-	+	GC07P142058	TRBV25-1
-	+	GC07P142068	TRBVA
-	+	GC07P141949	TRBV12-3
-	+	GC07P142083	TRBV26
-	+	GC07P142201	TRBJ1-1
+	-	GC07P142054	ENSG00000208325
-	+	GC07P142223	TRBJ1-4
-	+	GC07P141648	TRB@
-	+	GC07P142034	TRBV23-1
-	+	GC07P142025	TRBV20-1
-	+	GC07P142219	TRBJ1-2
-	+	GC07P142194	TRBD1
-	+	GC07P142022	TRBV18
-	+	GC07P142043	TRBV24-1

Genomic location based data

Error: can't execute SQL query:

Table 'ucsc_hg18_v4.all_est' doesn't exist

Genomic Location