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Weizmann Institute of Science

Version: v1.3
Release:
24 April 2007
Synchronized with: GeneCards v2.36
GeneLoc v2.36
GeneAnnot v1.5


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 GeneTide is an automated system for human transcripts (mRNA & ESTs) annotation and elucidation of
 de-novo genes. (
More about GeneTide.)

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GeneTide Query Results for U95 Probe set 32381_at which was created from Genbank accession Y08639


Gene Association Results Summary for Y08639 [help]

GC Gene GC ID UniGene DoTS AceView GeneAnnot BGL Co Uq Score Rank
RORB
GC09P076302
+
+
+
+
+
1.00
1.00
1.00
1


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GeneTide Query Results for the mRNA Y08639 [help]

  General links [help]

Similar transcripts

FASTA

UCSC Genome Browser

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  Validation Level [help]

Validated by RepeatMasker Validation Score
UniGene DoTS AceView
+
+
+
repeat_name
repeat_class
repeat_family
(CAAA)n
Simple
repeat
(CAG)n
Simple
repeat
(TCC)n
Simple
repeat

3 - High

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  Resources Annotation [help]

Resource

Data

UniGene

unigene_id
locuslink_id
gc_id
gene_symbol
Hs.494178
6096
GC09P076302
RORB

DoTs

dots_id
locuslink_id
gc_id
gene_symbol
DT.438580
6096
GC09P076302
RORB

AceView

av_symbol
locuslink_id
gc_id
gene_symbol
RORB
6096
GC09P076302
RORB

GeneAnnot

gb_id
probe_set
resource
gc_id
gene_symbol
Y08639
32381_at
1.probe_set_to_gc
GC09P076302
RORB

BLAT
GeneLoc

LocusLink_hit
Ensembl_hit
gc_id
gene_symbol
+
+
GC09P076302
RORB

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  Genomic location based data [help]

Genomic Location

Chr Str
orientation
chrom_start
chrom_end
cdna_start
cdna_end
length
matches
chr9
+
unknown
77112298
77300586
3
2026
2023
1913

Gene Territory

Str
start
end
gc_id
gene_symbol
+
76302072
76491937
GC09P076302
RORB

Splice Site
Known

YES

Repeat Masker

chrom
Str
start
end
repName
repClass
repFamily
9
+
76302448
76302573
(CAAA)n
Simple
repeat
9
+
76302197
76302306
(TCC)n
Simple
repeat
9
+
76302306
76302447
(TCC)n
Simple
repeat
9
+
76447149
76447551
(CAG)n
Simple
repeat


Current team:

Alexandra Sirota, Asaf Madi, Tsippi Iny Stein, Marilyn Safran (Head of the GeneCards project) and Doron Lancet (principal investigator).

Past team:

Maxim Shklar (founder), Shany Ron, Ohad Greenshpan.