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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 9

   GeneLoc map region (15,219 - 4,193,624 bp) around gene/marker "SMARCA2"

   Explanation:
   SMARCA2 is located at 2,015,219-2,193,624 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
117480 17547 - ENSG00000275076
Exon structure


ENSG00000275076
218648 18676 + PIR38329
Exon structure




320192 20895 - GC09M000020



414511 29739 - WASH1
Exon structure
Hs.461200; Hs.585931 100287171 ENSG00000181404 WAS protein family homolog 1
523974 26512 + GC09P000023



630144 30281 + MIR1302-9
Exon structure

100422831 ENSG00000278579 microRNA 1302-9
734394 35871 - FAM138C
Exon structure
Hs.744304 654835 ENSG00000218839 family with sequence similarity 138, member C
828948 43733 - GC09M000028



955314 58548 + GC09P000057



1045408 78416 - PGM5P3
Exon structure

101929157
phosphoglucomutase 5 pseudogene 3
1165637 65771 + GC09P000065



1268788 70258 - GC09M000069



1372600 88826 + PGM5P3-AS1
Exon structure

101929127 ENSG00000277631 PGM5P3 antisense RNA 1
14100804 102941 - ENSG00000227917
Exon structure


ENSG00000227917
15100994 102960 - LOC101929179
Exon structure

101929179 ENSG00000276462
1690304 118916 - GC09M000091



17112713 113754 - LINC01388
Exon structure

hugo380 ENSG00000231808 long intergenic non-protein coding RNA 1388
18114005 114034 + PIR58570
Exon structure




19114832 114862 + PIR36916
Exon structure




20114832 114862 + GC09P000118



21115067 115097 + PIR48620
Exon structure




22115067 115097 + GC09P000117



23116231 118417 - FOXD4
Exon structure
Hs.584759 2298 ENSG00000170122 forkhead box D4
24117507 117825 - GC09M000117



25117507 117825 - GC09M000118



26121038 179147 - CBWD1
Exon structure
Hs.645337; Hs.531330 55871 ENSG00000172785 COBW domain containing 1
27145402 161527 + GC09P000145



28155841 155874 + GC09P000155



29202004 210844 - GC09M000202



30212824 215893 - C9orf66
Exon structure
Hs.190877 157983 ENSG00000183784 chromosome 9 open reading frame 66
31225432 226470 - GC09M000225



32227212 229378 - GC09M000227



33245417 245450 + GC09P000245



34242104 294418 - GC09M000242



35267966 273002 - ENSG00000235880
Exon structure


ENSG00000235880
36333518 333553 + GC09P000333



37214854 465259 + DOCK8
Exon structure
Hs.132599 81704 ENSG00000107099 dedicator of cytokinesis 8
38354139 354166 + PIR47887
Exon structure




39454304 492112 - ENSG00000227155
Exon structure


ENSG00000227155
40477750 478423 + RPL12P25
Exon structure

100270926 ENSG00000235330 ribosomal protein L12 pseudogene 25
41487774 495610 + ENSG00000228115
Exon structure


ENSG00000228115
42500270 501493 + FAM217AP1
Exon structure

100133062
family with sequence similarity 217, member A pseudogene 1
43503057 504746 - GC09M000503



44507258 507553 - GC09M000509



45535932 540968 - GC09M000535



46547317 549531 + ENSG00000226403
Exon structure


ENSG00000226403
47558826 558930 + RNU6-1327P
Exon structure

hugo2234 ENSG00000202172 RNA, U6 small nuclear 1327, pseudogene
48558829 558930 + GC09P000558



49470291 746106 + KANK1
Exon structure
Hs.306764 23189 ENSG00000107104 KN motif and ankyrin repeat domains 1
50659986 660326 + EIF1P1
Exon structure

100505855 ENSG00000229875 eukaryotic translation initiation factor 1 pseudogene 1
51673478 685555 - ENSG00000227914
Exon structure


ENSG00000227914
52774692 774723 + GC09P000774



53841647 969090 + DMRT1
Exon structure
Hs.98586 1761 ENSG00000137090 doublesex and mab-3 related transcription factor 1
54908608 946416 - GC09M000908



55927110 928802 + GC09P000927



56932349 932375 + PIR40320
Exon structure




57941184 955083 + GC09P000941



58971472 971501 - PIR60936
Exon structure




59971523 971552 - PIR33633
Exon structure




60972812 972841 + PIR36801
Exon structure




61972910 972939 - PIR46442
Exon structure




62972971 972998 - PIR53361
Exon structure




63973339 973371 + PIR56215
Exon structure




64973339 973371 + GC09P000979



65973532 973559 + PIR39039
Exon structure




66973993 974020 + PIR49791
Exon structure




67974020 974048 + PIR37086
Exon structure




68974188 974410 + GC09P000980



69975548 983384 + GC09P000982



70976964 991732 + DMRT3
Exon structure
Hs.189174; Hs.672740 58524 ENSG00000064218 doublesex and mab-3 related transcription factor 3
71998326 998353 - PIR35120
Exon structure




72998759 998790 + PIR46494
Exon structure




73998805 998835 - PIR32380
Exon structure




741001858 1001963 - RNU6-1073P
Exon structure

hugo1957 ENSG00000252991 RNA, U6 small nuclear 1073, pseudogene
751011085 1011799 + ENSG00000228783
Exon structure


ENSG00000228783
761046757 1057554 + DMRT2
Exon structure
Hs.59506 10655 ENSG00000173253 doublesex and mab-3 related transcription factor 2
771094076 1096569 + GC09P001094



781151807 1152140 - ENSG00000224836
Exon structure


ENSG00000224836
791164414 1164867 - RPS27AP14
Exon structure

100271378 ENSG00000236594 ribosomal protein S27a pseudogene 14
801320119 1320232 + GC09P001320



811328664 1328987 + ENSG00000233575
Exon structure


ENSG00000233575
821327155 1333176 + LOC102723803
Exon structure

102723803

831333837 1333953 + RNA5SP279
Exon structure

100873532 ENSG00000202383 RNA, 5S ribosomal pseudogene 279
841333836 1333953 + GC09P001336



851346956 1359033 - GC09M001346



861368544 1395220 + GC09P001368



871368548 1395222 + GC09P001369



881492862 1497487 + GC09P001492



891494826 1508964 - GC09M001494



901505444 1508229 - GC09M001505



911707205 1707239 + PIR59143
Exon structure




921954272 1967229 + GC09P001954



931954276 1967231 + GC09P001955



941977784 1978547 - ENSG00000224092
Exon structure


ENSG00000224092
952022170 2022884 + GC09P002022



962041900 2046023 - ENSG00000236199
Exon structure


ENSG00000236199
972042994 2046019 + GC09P002042



982082438 2083739 - GC09M002082



992090852 2094668 + GC09P002090



1002100708 2101976 + GC09P002101



1012100708 2101976 + GC09P002102



1022100708 2101978 + GC09P002100



1032015219 2193624 + SMARCA2
Exon structure
Hs.298990 6595 ENSG00000080503 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
1042162762 2162953 - GC09M002162



1052162763 2162953 - RNU2-25P
Exon structure

hugo1730 ENSG00000222973 RNA, U2 small nuclear 25, pseudogene
1062192967 2193572 - GC09M002192



1072228961 2229241 - RN7SL592P
Exon structure

hugo1281 ENSG00000264615 RNA, 7SL, cytoplasmic 592, pseudogene
1082228963 2229241 - GC09M002228



1092297641 2297674 + PIR32198
Exon structure




1102423860 2494213 - LOC101930053
Exon structure

101930053

1112494273 2521943 - LOC101930048
Exon structure

101930048

1122422702 2643359 - VLDLR-AS1
Exon structure
Hs.416043 401491 ENSG00000236404 VLDLR antisense RNA 1
1132541097 2541635 + ENSG00000231052
Exon structure


ENSG00000231052
1142596552 2626860 + GC09P002596



1152639898 2639927 + PIR48978
Exon structure




1162621774 2660053 + VLDLR
Exon structure
Hs.370422 7436 ENSG00000147852 very low density lipoprotein receptor
1172708470 2722635 + GC09P002708



1182715909 2718334 - GC09M002715



1192717502 2730037 + KCNV2
Exon structure
Hs.622675; Hs.740173 169522 ENSG00000168263 potassium channel, voltage gated modifier subfamily V, member 2
1202759058 2759084 - PIR50784
Exon structure




1212759256 2760832 - GC09M002760



1222720469 2844241 - KIAA0020
Exon structure
Hs.493309 9933 ENSG00000080608 KIAA0020
1232844364 2845906 + GC09P002844



1242875387 2876503 - GPS2P1
Exon structure

392281 ENSG00000236496 G protein pathway suppressor 2 pseudogene 1
1252900240 2900846 - ATP5HP2
Exon structure

138234 ENSG00000229184 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 2
1262900320 2900804 - GC09M002902



1272924321 2924407 - ENSG00000221450
Exon structure


ENSG00000221450
1282907073 3053408 - CARM1P1
Exon structure

100130873 ENSG00000227835 coactivator-associated arginine methyltransferase 1 pseudogene 1
1293157329 3157359 + GC09P003158



1303181589 3200500 + LINC01231
Exon structure

101929247 ENSG00000236511 long intergenic non-protein coding RNA 1231
1313218302 3223008 - GC09M003218



1323364329 3364792 - ENSG00000215297
Exon structure


ENSG00000215297
1333218297 3526004 - RFX3
Exon structure
Hs.136829 5991 ENSG00000080298 regulatory factor X, 3 (influences HLA class II expression)
1343267036 3563080 + GC09P003267



1353451797 3451816 + GC09P003451



1363452305 3453987 - ENSG00000279745
Exon structure


ENSG00000279745
1373471983 3472099 + GC09P003471



1383475418 3475448 + PIR60517
Exon structure




1393479874 3481237 + GC09P003480



1403548681 3549736 + GC09P003548



1413550376 3551512 + GC09P003550



1423552597 3553312 + GC09P003552



1433526723 3691814 + RFX3-AS1
Exon structure

101929302 ENSG00000232104 RFX3 antisense RNA 1
1443647335 3648338 + ENSG00000237359
Exon structure


ENSG00000237359
1453651506 3651546 - PIR36675
Exon structure




1463684076 3689626 - ENSG00000226669
Exon structure


ENSG00000226669
1473816259 3816289 + PIR41950
Exon structure




1483834330 3847738 - GC09M003834



1493850822 3855669 + GC09P003850



1503875584 3878809 + ENSG00000236724
Exon structure


ENSG00000236724
1513898642 3901248 + GLIS3-AS1
Exon structure
Hs.676113 84850 ENSG00000237009 GLIS3 antisense RNA 1
1524003528 4004173 + GC09P004003



1534030682 4062673 + GC09P004030



1544030686 4062675 + GC09P004031



1554070906 4071884 - ENSG00000230001
Exon structure


ENSG00000230001
1564084558 4084712 + GC09P004084



1574083800 4087923 - GC09M004083



1583824127 4348392 - GLIS3
Exon structure
Hs.162125 169792 ENSG00000107249 GLIS family zinc finger 3
1594164351 4164513 + GC09P004164