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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 6

   GeneLoc map region (0 - 3,614,132 bp) around gene/marker "FOXC1"

   Explanation:
   FOXC1 is located at 1,610,681-1,614,132 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
177359 81728 + GC06P000080



295124 95454 + ENSG00000271530
Exon structure


ENSG00000271530
3105922 106856 - OR4F1P
Exon structure

26685 ENSG00000220212 olfactory receptor, family 4, subfamily F, member 1 pseudogene
4130803 145083 - GC06M000138



5131910 144885 - LINC00266-3
Exon structure

441123 ENSG00000170590 long intergenic non-protein coding RNA 266-3
6140776 140809 + GC06P000140



7142472 142671 + GC06P000158



8142272 144067 + CICP18
Exon structure

646070 ENSG00000217929 capicua transcriptional repressor pseudogene 18
9143832 144015 + GC06P000159



10144973 145169 - GC06M000148



11144973 145169 - GC06M000151



12145599 145915 - GC06M000145



13145637 145906 + GC06P000157



14146549 146580 - GC06M000147



15146609 146639 - GC06M000150



16155135 156639 + GC06P000161



17160003 160036 + GC06P000160



18167607 170631 - ENSG00000218577
Exon structure


ENSG00000218577
19184372 184398 + PIR60404
Exon structure




20183914 187741 + GC06P000187



21181466 205484 - RP3-416J7.4
Exon structure
Hs.657946 285766 ENSG00000263667 Uncharacterized LOC285766 (est)
22194570 194603 + GC06P000194



23196682 196974 - GC06M000196



24199286 199319 + GC06P000200



25203313 206392 + FLJ43763
Exon structure
Hs.629679 642316 ENSG00000205653 Uncharacterized LOC642316 (est)
26224950 226400 + GC06P000226



27229546 229576 - PIR44572
Exon structure




28229546 229576 - GC06M000231



29230932 237179 + GC06P000234



30277864 286279 - GC06M000280



31320303 320329 + PIR42293
Exon structure




32292520 348269 + GC06P000293



33291630 351355 + DUSP22
Exon structure
Hs.29106 56940 ENSG00000112679 dual specificity phosphatase 22
34348115 348141 + PIR35740
Exon structure




35348198 348225 + PIR49830
Exon structure




36350248 354323 - GC06M000353



37355564 355594 - GC06M000357



38355564 355594 - PIR52831
Exon structure




39372197 372224 + PIR48751
Exon structure




40372245 372271 - PIR47067
Exon structure




41372331 372361 - PIR37517
Exon structure




42376493 376519 + PIR61905
Exon structure




43383121 383631 - GC06M000386



44391739 411447 + IRF4
Exon structure
Hs.401013 3662 ENSG00000137265 interferon regulatory factor 4
45444487 444855 + GC06P000448



46446960 446986 - PIR55434
Exon structure




47451135 488420 + GC06P000451



48481970 482301 + GC06P000484



49524171 525581 + ENSG00000230433
Exon structure


ENSG00000230433
50560917 560950 + GC06P000560



51581030 581063 + GC06P000581



52485133 693117 - EXOC2
Exon structure
Hs.484412 55770 ENSG00000112685 exocyst complex component 2
53607651 607680 - PIR54847
Exon structure




54655939 656964 - HUS1B
Exon structure
Hs.669039 135458 ENSG00000188996 HUS1 checkpoint homolog b (S. pombe)
55659953 660284 + GC06P000662



56669080 670307 - LOC100421511
Exon structure

100421511 ENSG00000219712
57679143 693108 - GC06M000679



58698399 699725 - GC06M000704



59693957 713766 + GC06P000696



60708592 711405 - ENSG00000272463
Exon structure


ENSG00000272463
61719189 719220 + GC06P000719



62728063 728218 + GC06P000744



63729099 729313 + GC06P000746



64729068 730060 - GC06M000732



65729314 729823 + GC06P000745



66711533 750729 + ENSG00000271727
Exon structure


ENSG00000271727
67735952 736775 - GC06M000738



68766666 766880 + GC06P000769



69761675 780648 + ENSG00000271911
Exon structure


ENSG00000271911
70774747 780214 - ENSG00000272485
Exon structure


ENSG00000272485
71786465 786498 + GC06P000786



72800157 804829 + GC06P000803



73809436 866630 + GC06P000809



74861046 863352 + GC06P000861



75905462 909594 - LOC101930081
Exon structure

101930081 ENSG00000260982
76909969 909999 + PIR34123
Exon structure




77910086 910113 - PIR41244
Exon structure




78914198 915021 - GC06M000917



79927954 941471 + GC06P000937



80928313 941864 + GC06P000935



81928520 942035 + GC06P000936



82944914 945128 + GC06P000947



83965550 979067 + GC06P000966



84993273 994838 - GC06M000993



85996096 996125 - PIR33232
Exon structure




86994885 1017704 - GC06M000997



871015975 1020137 + GC06P001018



881019090 1019801 - GC06M001022



891026729 1027460 - ENSG00000270937
Exon structure


ENSG00000270937
90958563 1101567 - LOC285768
Exon structure
Hs.209463 285768 ENSG00000229796 Uncharacterized LOC285768 (est)
91958695 1132009 - GC06M000963



921059227 1064477 - GC06M001063



931079404 1079434 + GC06P001079



941080164 1105181 + ENSG00000176515
Exon structure


ENSG00000176515
951095426 1095456 + GC06P001095



961096104 1097216 + GC06P001099



971097261 1100722 + GC06P001100



981108577 1112186 + GC06P001111



991134224 1135287 - GC06M001135



1001135922 1139323 + GC06P001138



1011143795 1157308 + GC06P001145



1021160983 1165334 + GC06P001167



1031162086 1190338 - GC06M001163



1041186753 1186855 + ENSG00000238438
Exon structure


ENSG00000238438
1051186740 1192467 + GC06P001194



1061146343 1233001 - GC06M001147



1071198050 1201663 + GC06P001201



1081203693 1205430 + GC06P001210



1091206218 1206440 + GC06P001209



1101198412 1226587 - GC06M001199



1111213596 1217579 + GC06P001216



1121225317 1228718 + GC06P001228



1131234757 1235098 - GC06M001235



1141235684 1239504 + GC06P001238



1151239869 1240654 - GC06M001240



1161241473 1244748 + GC06P001244



1171266664 1271076 + GC06P001270



1181274920 1276939 - GC06M001275



1191208639 1359404 - GC06M001209



1201292427 1293205 + GC06P001295



1211303076 1307061 + GC06P001306



1221308821 1311917 - GC06M001311



1231311716 1312486 + GC06P001315



1241312675 1314993 + FOXQ1
Exon structure
Hs.591352 94234 ENSG00000164379 forkhead box Q1
1251324753 1328031 + GC06P001327



1261331632 1331659 + PIR53094
Exon structure




1271356717 1356747 + GC06P001358



1281355612 1359597 + GC06P001359



1291369125 1372586 + GC06P001372



1301350652 1410862 - GC06M001351



1311380441 1384050 + GC06P001383



1321384025 1385301 - ENSG00000261730
Exon structure


ENSG00000261730
1331386144 1388906 - GC06M001388



1341390069 1395832 + FOXF2
Exon structure
Hs.484423 2295 ENSG00000137273 forkhead box F2
1351406088 1407151 - GC06M001407



1361407786 1411187 + GC06P001410



1371423401 1425665 - GC06M001426



1381441747 1443745 - GC06M001444



1391454595 1457873 + GC06P001458



1401457002 1457044 + GC06P001457



1411453543 1489842 - GC06M001453



1421474837 1477102 - GC06M001477



1431485462 1489445 + GC06P001488



1441489678 1490173 + GC06P001495



1451507557 1507851 + RN7SL352P
Exon structure

hugo1122 ENSG00000243439 RNA, 7SL, cytoplasmic 352, pseudogene
1461512576 1515817 - ELF2P2
Exon structure

260335 ENSG00000218027 E74-like factor 2 pseudogene 2
1471490481 1546716 + GC06P001498



1481520255 1528405 + GC06P001522



1491528599 1529146 - ENSG00000272279
Exon structure


ENSG00000272279
1501552031 1552061 + GC06P001552



1511564487 1564517 + GC06P001564



1521575419 1608879 + GC06P001579



1531548086 1642995 - GC06M001551



1541604457 1607583 + GC06P001604



1551610789 1611211 + GC06P001622



1561610790 1611214 + GC06P001623



1571610896 1611214 + GC06P001621



1581610681 1614132 + FOXC1
Exon structure
Hs.348883 2296 ENSG00000054598 forkhead box C1
1591612577 1614127 + GC06P001620



1601675823 1675853 + GC06P001675



1611696863 1696891 - PIR36904
Exon structure




1621679406 1726711 - GC06M001679



1631727169 1729106 - GC06M001730



1641739435 1746752 + GC06P001742



1651782162 1782415 + GC06P001786



1661767197 1806933 - GC06M001770



1671818578 1818608 + GC06P001818



1681853489 1853519 + GC06P001853



1691887520 1908235 + GC06P001893



1701900321 1900347 - PIR38406
Exon structure




1711931750 1933685 - GC06M001936



1721932480 1934415 - GC06M001935



1731624041 2245926 - GMDS
Exon structure
Hs.144496; Hs.660919 2762 ENSG00000112699 GDP-mannose 4,6-dehydratase
1741948760 1949249 - GC06M001957



1751949489 1949978 - GC06M001958



1761950463 1952398 - GC06M001959



1771967473 1967962 - GC06M001970



1781971122 1973057 - GC06M001974



1791976469 1996456 + GC06P001980



1801986914 1988849 - GC06M001989



1812003923 2004412 - GC06M002006



1822020703 2022638 - GC06M002023



1832037712 2038201 - GC06M002040



1842111628 2111821 + GC06P002114



1852106666 2126649 + GC06P002110



1862150891 2152826 - GC06M002153



1872167900 2168389 - GC06M002170



1882227986 2233730 + GC06P002227



1892244111 2245808 + GC06P002259



1902259533 2273651 - GC06M002262



1912272911 2273285 - GC06M002273



1922318135 2324833 + GC06P002319



1932324973 2325332 - GC06M002324



1942336693 2342363 + GC06P002337



1952341591 2342734 + HMGN2P28
Exon structure

100128372 ENSG00000236086 high mobility group nucleosomal binding domain 2 pseudogene 28
1962345787 2345818 + GC06P002345



1972245981 2482256 + GMDS-AS1
Exon structure
Hs.188825 100508120 ENSG00000250903 GMDS antisense RNA 1 (head to head)
1982370339 2376003 + GC06P002371



1992396414 2396687 + GC06P002399



2002409770 2409869 - ENSG00000266252
Exon structure


ENSG00000266252
2012429591 2434145 - GC06M002432



2022435149 2435586 - GC06M002442



2032437783 2438483 + ENSG00000272465
Exon structure


ENSG00000272465
2042437381 2441546 - GC06M002444



2052438653 2442818 - GC06M002443



2062441846 2442006 + GC06P002444



2072446252 2446270 + GC06P002446



2082462234 2462260 + PIR61847
Exon structure




2092461380 2468881 + GC06P002464



2102468676 2473229 - GC06M002471



2112482083 2486639 - GC06M002485



2122481107 2488536 - GC06M002481



2132489875 2494044 - GC06M002492



2142497017 2502141 + GC06P002497



2152500578 2500606 + PIR59473
Exon structure




2162515662 2520218 - GC06M002518



2172523453 2527623 - GC06M002526



2182529779 2530001 - GC06M002535



2192531262 2533089 - GC06M002536



2202536690 2542360 + GC06P002537



2212547503 2553758 + GC06P002548



2222562180 2564377 - GC06M002565



2232570007 2570229 - GC06M002575



2242584899 2586733 - GC06M002586



2252602637 2602670 + GC06P002602



2262615167 2615390 - GC06M002621



2272616734 2618227 - GC06M002623



2282617460 2618250 + GC06P002618



2292622147 2635298 - C6orf195
Exon structure
Hs.680574 154386 ENSG00000164385 chromosome 6 open reading frame 195
2302637170 2640235 + ENSG00000228718
Exon structure


ENSG00000228718
2312639001 2639029 + PIR55810
Exon structure




2322652778 2653215 - GC06M002661



2332658224 2658492 - GC06M002662



2342656282 2660447 - GC06M002664



2352666678 2666713 + GC06P002666



2362661007 2676634 + GC06P002662



2372670920 2671188 - GC06M002673



2382454195 2900910 + GC06P002454



2392680310 2686514 + GC06P002681



2402663863 2751200 - MYLK4
Exon structure
Hs.127830 340156 ENSG00000145949 myosin light chain kinase family, member 4
2412701359 2729520 + GC06P002703



2422732712 2733890 + GC06P002733



2432749422 2765826 - GC06M002752



2442761727 2764356 + GC06P002762



2452765513 2765541 + PIR54135
Exon structure




2462769772 2770950 + GC06P002770



2472765648 2787186 + WRNIP1
Exon structure
Hs.236828 56897 ENSG00000124535 Werner helicase interacting protein 1
2482771261 2822143 - GC06M002775



2492811904 2813365 + GC06P002812



2502812684 2821649 - GC06M002813



2512818786 2819964 + GC06P002819



2522826292 2827170 + GC06P002827



2532830081 2830867 + GC06P002831



2542834389 2835267 + GC06P002835



2552834162 2835745 - GC06M002836



2562836632 2837423 + GC06P002837



2572832566 2842240 - SERPINB1
Exon structure
Hs.381167 1992 ENSG00000021355 serpin peptidase inhibitor, clade B (ovalbumin), member 1
2582838180 2838966 + GC06P002841



2592839499 2842231 + GC06P002840



2602842261 2843844 - GC06M002845



2612828801 2857517 - GC06M002829



2622847596 2850328 + GC06P002848



2632854265 2854341 - MIR4645
Exon structure

100616285 ENSG00000266750 microRNA 4645
2642858398 2858424 - PIR43328
Exon structure




2652859258 2860044 + GC06P002860



2662860879 2860920 - GC06M002869



2672863339 2864922 - GC06M002870



2682854300 2876805 - GC06M002871



2692854891 2881641 - SERPINB9P1
Exon structure
Hs.8162 221756 ENSG00000230438 serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1
2702868674 2871404 + GC06P002869



2712871552 2872430 + GC06P002872



2722875341 2876127 + GC06P002876



2732879925 2879953 + PIR60730
Exon structure




2742883635 2884513 + GC06P002890



2752877747 2894368 - GC06M002882



2762891505 2893088 - GC06M002895



2772887500 2903545 - SERPINB9
Exon structure
Hs.104879 5272 ENSG00000170542 serpin peptidase inhibitor, clade B (ovalbumin), member 9
2782909101 2909131 + GC06P002909



2792910847 2912347 - ENSG00000232999
Exon structure


ENSG00000232999
2802917128 2917967 + ENSG00000228365
Exon structure


ENSG00000228365
2812920457 2921335 + GC06P002923



2822924246 2925032 + GC06P002926



2832928327 2929910 - GC06M002932



2842917128 2943240 + GC06P002918



2852933659 2936387 + GC06P002947



2862940298 2956709 - GC06M002943



2872948660 2949838 + GC06P002952



2882953383 2953413 - PIR46440
Exon structure




2892953383 2953413 - GC06M002955



2902948393 2972399 - SERPINB6
Exon structure
Hs.519523 5269 ENSG00000124570 serpin peptidase inhibitor, clade B (ovalbumin), member 6
2912965323 2967412 - GC06M002970



2922968704 2971151 + GC06P002972



2932973392 2975481 - GC06M002976



2942976773 2979214 + GC06P002979



2952988201 2991407 + LINC01011
Exon structure
Hs.720158 401232 ENSG00000244041 long intergenic non-protein coding RNA 1011
2962989960 2999368 - ENSG00000224846
Exon structure


ENSG00000224846
2972988221 3019996 + NQO2
Exon structure
Hs.533050; Hs.145597 4835 ENSG00000124588 NAD(P)H dehydrogenase, quinone 2
2982985532 3025005 - GC06M002987



2992993299 3023034 + GC06P003009



3003010570 3012659 - GC06M003011



3013020388 3022984 + ENSG00000270346
Exon structure


ENSG00000270346
3023020390 3025005 - HTATSF1P2
Exon structure
Hs.441039; Hs.745279 401233 ENSG00000271361 HIV-1 Tat specific factor 1 pseudogene 2
3033025025 3027659 + ENSG00000261015
Exon structure


ENSG00000261015
3043028466 3028498 - GC06M003028



3053034406 3050818 - GC06M003038



3063040682 3047375 + GC06P003041



3073045618 3046034 + FAM136BP
Exon structure

387071 ENSG00000232654 family with sequence similarity 136, member B, pseudogene
3083049069 3049468 + SERPINB8P1
Exon structure

11029 ENSG00000217707 serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1
3093051335 3053998 - GC06M003053



3103054156 3054942 + GC06P003055



3113056211 3056237 + PIR47178
Exon structure




3123056124 3056995 + ENSG00000229282
Exon structure


ENSG00000229282
3133058237 3061527 - GC06M003062



3143063572 3066298 + GC06P003067



3153068279 3069128 - ENSG00000272277
Exon structure


ENSG00000272277
3163076966 3077179 + GC06P003079



3173076992 3078808 - GC06M003079



3183081112 3082067 + GC06P003084



3193088920 3089043 - RNA5SP201
Exon structure

100873462 ENSG00000222248 RNA, 5S ribosomal pseudogene 201
3203089176 3090131 + GC06P003091



3213064225 3115421 + RIPK1
Exon structure
Hs.519842 8737 ENSG00000137275 receptor (TNFRSF)-interacting serine-threonine kinase 1
3223087409 3112321 + GC06P003092



3233105295 3105328 + GC06P003105



3243113223 3113249 + PIR43479
Exon structure




3253115751 3116707 - GC06M003115



3263118962 3124377 + GC06P003126



3273118925 3153432 + GC06P003125



3283118608 3153812 + BPHL
Exon structure
Hs.10136 670 ENSG00000137274 biphenyl hydrolase-like (serine hydrolase)
3293137609 3152773 + GC06P003141



3303137608 3153280 + GC06P003142



3313138628 3153296 - ENSG00000228170
Exon structure


ENSG00000228170
3323145308 3147195 + GC06P003145



3333150252 3152439 - GC06M003167



3343154102 3155126 - GC06M003166



3353154102 3155126 - GC06M003162



3363154859 3155103 + GC06P003160



3373153900 3157783 - TUBB2A
Exon structure
Hs.654543 7280 ENSG00000137267 tubulin, beta 2A class IIa
3383171543 3171585 - GC06M003174



3393164345 3180755 - GC06M003175



3403177273 3179998 - TUBB2BP1
Exon structure

100132153 ENSG00000216819 tubulin, beta 2B class IIb pseudogene 1
3413182978 3196001 - RP1-40E16.9
Exon structure
Hs.678053 100507194 ENSG00000230269 Uncharacterized LOC100507194 (est)
3423192747 3195198 + GC06P003195



3433205964 3205995 + GC06P003207



3443224718 3225366 - GC06M003267



3453224519 3225718 - GC06M003253



3463224519 3225718 - GC06M003251



3473224729 3225561 - GC06M003256



3483224793 3225714 - GC06M003252



3493224729 3225962 - GC06M003257



3503224729 3226015 - GC06M003260



3513225542 3226494 - GC06M003265



3523224495 3231964 - TUBB2B
Exon structure
Hs.300701 347733 ENSG00000137285 tubulin, beta 2B class IIb
3533217334 3243013 + GC06P003221



3543232924 3233572 - GC06M003268



3553254645 3258407 + GC06P003264



3563258996 3262269 + GC06P003262



3573263979 3264008 + PIR45758
Exon structure




3583261780 3266383 - GC06M003266



3593231637 3303607 + PSMG4
Exon structure
Hs.207069; Hs.731726 389362 ENSG00000180822 proteasome (prosome, macropain) assembly chaperone 4
3603268306 3268333 + PIR34454
Exon structure




3613266750 3270475 + GC06P003270



3623269918 3269944 - PIR47461
Exon structure




3633269986 3274708 - GC06M003276



3643292899 3293112 + GC06P003295



3653302701 3305285 - GC06M003306



3663305107 3306062 + GC06P003322



3673308175 3308204 + PIR62094
Exon structure




3683308907 3313510 - GC06M003312



3693311896 3313884 + ENSG00000272320
Exon structure


ENSG00000272320
3703313877 3314670 + GC06P003317



3713318979 3319627 - GC06M003322



3723321302 3321331 - PIR53779
Exon structure




3733318796 3329068 + GC06P003321



3743323576 3324399 - GC06M003323



3753329028 3329317 - GC06M003332



3763345149 3364842 - GC06M003345



3773355551 3356530 + GC06P003358



3783361011 3361804 + GC06P003364



3793269196 3457256 - SLC22A23
Exon structure
Hs.713588 63027 ENSG00000137266 solute carrier family 22, member 23
3803381593 3383155 - GC06M003383



3813382789 3397082 + GC06P003386



3823399752 3401315 - GC06M003402



3833400949 3404884 + GC06P003404



3843407252 3409588 + GC06P003409



3853409765 3413119 - GC06M003412



3863429653 3429942 - GC06M003432



3873435317 3436880 - GC06M003438



3883448891 3449539 - GC06M003451



3893445788 3466840 - GC06M003445



3903436514 3483790 + GC06P003438



3913468304 3469867 - GC06M003470



3923479583 3484305 - GC06M003482



3933489141 3489175 + GC06P003491



3943489056 3491392 + GC06P003492



3953491569 3494923 - GC06M003494



3963500402 3501965 - GC06M003503



3973501599 3515891 + GC06P003503



3983514594 3514622 + PIR56392
Exon structure




3993526061 3528395 + GC06P003529



4003528572 3531926 - GC06M003531



4013536616 3556049 - GC06M003536



4023591246 3592810 - GC06M003599



4033592444 3606743 + GC06P003596



4043594481 3624981 - ENSG00000228793
Exon structure


ENSG00000228793
4053593988 3720131 - GC06M003600