GeneLoc Home GeneCards Home MalaCards Home About GeneLoc Contact Us
Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 6

   GeneLoc map region (0 - 3,613,897 bp) around gene/marker "FOXC1"

   Explanation:
   FOXC1 is located at 1,609,972-1,613,897 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
195124 95454 + ENSG00000271530
Exon structure


ENSG00000271530
2105922 106856 - OR4F1P
Exon structure

26685 ENSG00000220212 olfactory receptor, family 4, subfamily F, member 1 pseudogene
3131910 148159 - LINC00266-3
Exon structure

441123 ENSG00000170590 long intergenic non-protein coding RNA 266-3
4140779 140809 + GC06P000140



5142472 142671 + GC06P000143



6142272 144067 + CICP18
Exon structure

646070 ENSG00000217929 capicua transcriptional repressor pseudogene 18
7143832 144015 + GC06P000147



8144973 145169 - GC06M000144



9145599 145915 - GC06M000145



10145637 145906 + GC06P000146



11146549 146580 - GC06M000147



12146609 146639 - GC06M000148



13154718 159087 + GC06P000154



14160003 160036 + GC06P000160



15167607 170631 - ENSG00000218577
Exon structure


ENSG00000218577
16184372 184398 + PIR60404
Exon structure




17181466 205484 - LOC285766
Exon structure
Hs.657946 285766 ENSG00000263667 Uncharacterized LOC285766 (est)
18196682 196974 - GC06M000196



19203313 206392 + ENSG00000205653
Exon structure


ENSG00000205653
20229546 229576 - GC06M000230



21229546 229576 - PIR44572
Exon structure




22261606 275886 - GC06M000261



23278083 286062 - LOC102723922
Exon structure

102723922

24310270 311774 + GC06P000310



25320303 320329 + PIR42293
Exon structure




26291630 351355 + DUSP22
Exon structure
Hs.29106 56940 ENSG00000112679 dual specificity phosphatase 22
27335214 339827 - GC06M000335



28348115 348141 + PIR35740
Exon structure




29348198 348225 + PIR49830
Exon structure




30355564 355594 - PIR52831
Exon structure




31355564 355594 - GC06M000356



32367828 371655 + GC06P000367



33372245 372271 - PIR47067
Exon structure




34372331 372361 - PIR37517
Exon structure




35362932 386950 - GC06M000362



36376493 376519 + PIR61905
Exon structure




37383121 383631 - GC06M000383



38391739 411447 + IRF4
Exon structure
Hs.401013 3662 ENSG00000137265 interferon regulatory factor 4
39406626 409705 + GC06P000406



40444487 444855 + GC06P000444



41446960 446986 - PIR55434
Exon structure




42449900 451350 + GC06P000449



43461864 468111 + GC06P000461



44481970 482301 + GC06P000481



45524171 525581 + ENSG00000230433
Exon structure


ENSG00000230433
46555728 564143 - GC06M000555



47485133 693141 - EXOC2
Exon structure
Hs.484412 55770 ENSG00000112685 exocyst complex component 2
48607651 607680 - PIR54847
Exon structure




49585040 640789 + GC06P000585



50655939 656964 - HUS1B
Exon structure
Hs.669039 135458 ENSG00000188996 HUS1 checkpoint homolog b (S. pombe)
51659953 660284 + GC06P000659



52669080 670307 - LOC100421511
Exon structure

100421511 ENSG00000219712
53700496 704571 - GC06M000700



54708592 711405 - ENSG00000272463
Exon structure


ENSG00000272463
55719189 719220 + GC06P000719



56729099 729313 + GC06P000730



57729314 729823 + GC06P000729



58711533 750729 + ENSG00000271727
Exon structure


ENSG00000271727
59744394 744421 + PIR48751
Exon structure




60766666 766880 + GC06P000766



61761675 780648 + ENSG00000271911
Exon structure


ENSG00000271911
62774747 780214 - ENSG00000272485
Exon structure


ENSG00000272485
63868439 876613 + LOC101927691
Exon structure

101927691

64905445 909006 - ENSG00000276687
Exon structure


ENSG00000276687
65909658 909685 - PIR41244
Exon structure




66909119 910969 + LOC101927353
Exon structure

101927353

67902263 939307 + GC06P000902



68944666 944880 + GC06P000944



69995861 995890 - PIR33232
Exon structure




701018855 1019566 - GC06M001018



711026494 1027225 - ENSG00000270937
Exon structure


ENSG00000270937
72958324 1101332 - LOC285768
Exon structure
Hs.209463 285768 ENSG00000278343 Uncharacterized LOC285768 (est)
731048107 1049517 + GC06P001048



741056096 1056438 - GC06M001056



751079929 1104946 + ENSG00000176515
Exon structure


ENSG00000176515
761095869 1096981 + GC06P001095



771108342 1111951 + GC06P001108



781133989 1135052 - GC06M001133



791160748 1165099 + GC06P001160



801197815 1201428 + GC06P001197



811205983 1206205 + GC06P001205



821234522 1234863 - GC06M001234



831274685 1276704 - GC06M001274



841308586 1311682 - GC06M001309



851312440 1314758 + FOXQ1
Exon structure
Hs.591352 94234 ENSG00000164379 forkhead box Q1
861331397 1331424 + PIR53094
Exon structure




871358051 1372016 - GC06M001358



881380206 1383815 + GC06P001380



891383790 1385066 - ENSG00000261730
Exon structure


ENSG00000261730
901385909 1388671 - GC06M001386



911390314 1390411 - MIR6720
Exon structure

102466720 ENSG00000275859 microRNA 6720
921389834 1395597 + FOXF2
Exon structure
Hs.484423 2295 ENSG00000137273 forkhead box F2
931396563 1397889 - GC06M001396



941387679 1407488 + GC06P001387



951405853 1406916 - GC06M001405



961423166 1425430 - GC06M001423



971441512 1443510 - GC06M001441



981456767 1456809 + PIR58610
Exon structure




991457901 1458893 - GC06M001457



1001471669 1472492 - GC06M001471



1011474602 1476867 - GC06M001474



1021459076 1502550 - LOC102723944
Exon structure

102723944

1031507322 1507598 + RN7SL352P
Exon structure

hugo1069 ENSG00000243439 RNA, 7SL, cytoplasmic 352, pseudogene
1041507322 1507616 + GC06P001509



1051512341 1515582 - ELF2P2
Exon structure

260335 ENSG00000218027 E74-like factor 2 pseudogene 2
1061528364 1528911 - ENSG00000272279
Exon structure


ENSG00000272279
1071550677 1555435 - GC06M001550



1081600079 1604751 + GC06P001600



1091604259 1607358 + FOXCUT
Exon structure

101927703
FOXC1 upstream transcript (non-protein coding)
1101610661 1610979 + GC06P001611



1111609972 1613897 + FOXC1
Exon structure
Hs.348883 2296 ENSG00000054598 forkhead box C1
1121612342 1613892 + GC06P001612



1131617163 1620757 - FLJ46552
Exon structure
Hs.531363 401230
FLJ46552 protein (est)
1141618637 1675832 + GC06P001618



1151675206 1679368 + GC06P001675



1161696629 1696657 - PIR36904
Exon structure




1171721858 1724164 + GC06P001721



1181726935 1728872 - GC06M001726



1191781928 1782181 + GC06P001781



1201810690 1814822 - GC06M001810



1211819704 1819734 + PIR34123
Exon structure




1221828162 1828985 - GC06M001828



1231855674 1869191 + GC06P001855



1241856392 1869943 + GC06P001856



1251856806 1870321 + GC06P001857



1261900087 1900113 - PIR38406
Exon structure




1271623800 2245692 - GMDS
Exon structure
Hs.144496; Hs.660919 2762 ENSG00000112699 GDP-mannose 4,6-dehydratase
1281930866 1944383 + GC06P001930



1291948526 1949015 - GC06M001948



1301949255 1949744 - GC06M001949



1311967239 1967728 - GC06M001967



1321986312 1987877 - GC06M001986



1331989536 2012355 - GC06M001989



1341917156 2090470 - GC06M001917



1352003689 2004178 - GC06M002003



1362031716 2035878 + GC06P002031



1372037478 2037967 - GC06M002037



1382064022 2086470 - GC06M002064



1392118220 2123470 - GC06M002118



1402167666 2168155 - GC06M002167



1412194288 2197749 + GC06P002194



1422271610 2275011 + GC06P002272



1432287356 2300869 + GC06P002289



1442317901 2324599 + GC06P002317



1452292452 2379110 - GC06M002292



1462323938 2352190 - GC06M002323



1472336459 2342129 + GC06P002336



1482341357 2342500 + HMGN2P28
Exon structure

100128372 ENSG00000236086 high mobility group nucleosomal binding domain 2 pseudogene 28
1492345553 2345584 + GC06P002345



1502356732 2362390 + GC06P002357



1512245748 2482022 + GMDS-AS1
Exon structure
Hs.188825 100508120 ENSG00000250903 GMDS antisense RNA 1 (head to head)
1522370105 2375769 + GC06P002370



1532373246 2378973 + GC06P002373



1542407152 2408889 + GC06P002407



1552409536 2409635 - ENSG00000266252
Exon structure


ENSG00000266252
1562396590 2424765 - GC06M002396



1572426958 2430941 + GC06P002426



1582434915 2435352 - GC06M002434



1592437549 2438249 + ENSG00000272465
Exon structure


ENSG00000272465
1602446018 2446036 + GC06P002446



1612450400 2453801 + GC06P002450



1622462000 2462026 + PIR61847
Exon structure




1632471134 2474954 + GC06P002471



1642479504 2480289 - GC06M002479



1652482712 2485987 + GC06P002482



1662417044 2567809 - GC06M002417



1672500344 2500372 + PIR59473
Exon structure




1682529545 2529767 - GC06M002529



1692533094 2537506 + GC06P002533



1702536456 2542126 + GC06P002536



1712544198 2548289 + GC06P002544



1722561947 2564143 - GC06M002561



1732561947 2564143 + ENSG00000280423
Exon structure


ENSG00000280423
1742569773 2569995 - GC06M002569



1752584620 2585398 + GC06P002584



1762602403 2602436 + GC06P002602



1772605918 2609903 + GC06P002605



1782614933 2615156 - GC06M002614



1792623198 2623968 + GC06P002623



1802621913 2635064 - LINC01600
Exon structure
Hs.680574 154386 ENSG00000164385 long intergenic non-protein coding RNA 1600
1812636936 2640001 + ENSG00000228718
Exon structure


ENSG00000228718
1822638767 2638795 + PIR55810
Exon structure




1832649272 2652550 + GC06P002649



1842652544 2652981 - GC06M002652



1852657990 2658258 - GC06M002657



1862666444 2666479 + GC06P002666



1872670686 2670954 - GC06M002670



1882710990 2714975 + GC06P002711



1892663629 2765381 - MYLK4
Exon structure
Hs.127830 340156 ENSG00000145949 myosin light chain kinase family, member 4
1902701070 2761280 - GC06M002701



1912732478 2733656 + GC06P002732



1922738016 2741477 + GC06P002738



1932765279 2765307 + PIR54135
Exon structure




1942769538 2770716 + GC06P002769



1952765341 2786952 + WRNIP1
Exon structure
Hs.236828 56897 ENSG00000124535 Werner helicase interacting protein 1
1962811670 2813131 + GC06P002811



1972815338 2818739 + GC06P002815



1982818552 2819730 + GC06P002818



1992832332 2842049 - SERPINB1
Exon structure
Hs.381167 1992 ENSG00000021355 serpin peptidase inhibitor, clade B (ovalbumin), member 1
2002854031 2854107 - MIR4645
Exon structure

100616285 ENSG00000266750 microRNA 4645
2012858164 2858190 - PIR43328
Exon structure




2022854657 2881407 - SERPINB9P1
Exon structure
Hs.8162 221756 ENSG00000230438 serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1
2032879691 2879719 + PIR60730
Exon structure




2042883988 2901061 + LOC101927730
Exon structure

101927730

2052887265 2903312 - SERPINB9
Exon structure
Hs.104879 5272 ENSG00000170542 serpin peptidase inhibitor, clade B (ovalbumin), member 9
2062908867 2908897 + GC06P002908



2072908956 2912234 + GC06P002909



2082910613 2912113 - ENSG00000232999
Exon structure


ENSG00000232999
2092916894 2917733 + ENSG00000228365
Exon structure


ENSG00000228365
2102906852 2943151 - GC06M002906



2112948426 2949604 + GC06P002948



2122953149 2953179 - PIR46440
Exon structure




2132953149 2953179 - GC06M002954



2142948159 2972165 - SERPINB6
Exon structure
Hs.519523 5269 ENSG00000124570 serpin peptidase inhibitor, clade B (ovalbumin), member 6
2152970690 2974673 + GC06P002970



2162979122 2979617 + GC06P002979



2172987967 2991173 + LINC01011
Exon structure
Hs.720158 401232 ENSG00000244041 long intergenic non-protein coding RNA 1011
2182989722 2999134 - ENSG00000224846
Exon structure


ENSG00000224846
2192987987 3028869 + NQO2
Exon structure
Hs.533050; Hs.145597 4835 ENSG00000124588 NAD(P)H dehydrogenase, quinone 2
2202980728 3036963 + GC06P002980



2213020156 3024771 - HTATSF1P2
Exon structure
Hs.441039; Hs.745279 401233 ENSG00000271361 HIV-1 Tat specific factor 1 pseudogene 2
2223025694 3027434 + LOC101927759
Exon structure

101927759

2233033183 3033288 + ENSG00000274855
Exon structure


ENSG00000274855
2243040276 3048426 + GC06P003040



2253045384 3045800 + FAM136BP
Exon structure

387071 ENSG00000232654 family with sequence similarity 136, member B, pseudogene
2263048835 3049234 + SERPINB8P1
Exon structure

11029 ENSG00000217707 serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1
2273055977 3056003 + PIR47178
Exon structure




2283055890 3056761 + ENSG00000229282
Exon structure


ENSG00000229282
2293068045 3068894 - ENSG00000272277
Exon structure


ENSG00000272277
2303076732 3076945 + GC06P003076



2313076758 3078574 - GC06M003076



2323080878 3081833 + GC06P003080



2333088686 3088809 - RNA5SP201
Exon structure

100873462 ENSG00000222248 RNA, 5S ribosomal pseudogene 201
2343088942 3089897 + GC06P003088



2353063967 3115187 + RIPK1
Exon structure
Hs.519842 8737 ENSG00000137275 receptor (TNFRSF)-interacting serine-threonine kinase 1
2363112989 3113015 + PIR43479
Exon structure




2373114446 3121835 + GC06P003115



2383118374 3153578 + BPHL
Exon structure
Hs.10136 670 ENSG00000137274 biphenyl hydrolase-like (serine hydrolase)
2393095938 3190847 - GC06M003095



2403138394 3153062 - ENSG00000228170
Exon structure


ENSG00000228170
2413153868 3154892 - GC06M003154



2423153868 3154892 - GC06M003155



2433153666 3157549 - TUBB2A
Exon structure
Hs.654543 7280 ENSG00000137267 tubulin, beta 2A class IIa
2443150604 3184064 + GC06P003150



2453177039 3179764 - TUBB2BP1
Exon structure

100132153 ENSG00000216819 tubulin, beta 2B class IIb pseudogene 1
2463182744 3195767 - LOC100507194
Exon structure
Hs.678053 100507194 ENSG00000230269 Uncharacterized LOC100507194 (est)
2473208680 3211806 + GC06P003208



2483221344 3221766 + GC06P003221



2493221346 3221770 + GC06P003222



2503224285 3225484 - GC06M003227



2513224285 3225484 - GC06M003225



2523224495 3225327 - GC06M003229



2533224559 3225480 - GC06M003226



2543224261 3231730 - TUBB2B
Exon structure
Hs.300701 347733 ENSG00000137285 tubulin, beta 2B class IIb
2553263745 3263774 + PIR45758
Exon structure




2563231403 3303373 + PSMG4
Exon structure
Hs.207069; Hs.731726 389362 ENSG00000180822 proteasome (prosome, macropain) assembly chaperone 4
2573268072 3268099 + PIR34454
Exon structure




2583269684 3269710 - PIR47461
Exon structure




2593292665 3292878 + GC06P003292



2603304873 3305828 + GC06P003304



2613307941 3307970 + PIR62094
Exon structure




2623311662 3313650 + ENSG00000272320
Exon structure


ENSG00000272320
2633328794 3329083 - GC06M003328



2643268962 3457022 - SLC22A23
Exon structure
Hs.713588 63027 ENSG00000137266 solute carrier family 22, member 23
2653358578 3405883 - GC06M003358



2663429419 3429708 - GC06M003429



2673456230 3468912 + LOC643327
Exon structure
Hs.631820 643327
Uncharacterized LOC643327 (est)
2683478636 3485953 + GC06P003478



2693514360 3514388 + PIR56392
Exon structure




2703534160 3573896 - GC06M003534



2713594247 3624747 - ENSG00000228793
Exon structure


ENSG00000228793