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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 6

   GeneLoc map region (0 - 3,613,897 bp) around gene/marker "FOXC1"

   Explanation:
   FOXC1 is located at 1,609,972-1,613,897 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
195124 95454 + WBP1LP12
Exon structure

106480327 ENSG00000271530 WW domain binding protein 1-like pseudogene 12
2105922 106856 - OR4F1P
Exon structure

26685 ENSG00000220212 olfactory receptor, family 4, subfamily F, member 1 pseudogene
3131910 148159 - LINC00266-3
Exon structure

441123 ENSG00000170590 long intergenic non-protein coding RNA 266-3
4140779 140809 + GC06P000140



5142472 142671 + GC06P000143



6143832 144015 + GC06P000147



7142230 145994 + CICP18
Exon structure

646070 ENSG00000217929 capicua transcriptional repressor pseudogene 18
8144973 145169 - GC06M000144



9145599 145915 - GC06M000145



10145637 145906 + GC06P000146



11146549 146580 - GC06M000147



12146609 146639 - GC06M000148



13154718 159087 + GC06P000154



14160003 160036 + GC06P000160



15167607 170631 - ENSG00000218577
Exon structure


ENSG00000218577
16184372 184398 + PIR60404
Exon structure




17182309 187745 + LOC105374869
Exon structure

105374869

18181466 205484 - LOC285766
Exon structure
Hs.657946 285766 ENSG00000263667 Uncharacterized LOC285766 (est)
19196682 196974 - GC06M000196



20203313 206392 + ENSG00000205653
Exon structure


ENSG00000205653
21229546 229576 - PIR44572
Exon structure




22229546 229576 - GC06M000230



23230930 237089 + LOC105374870
Exon structure

105374870

24261606 275886 - GC06M000261



25266184 292170 - LOC102723922
Exon structure

102723922

26310270 311774 + GC06P000310



27320303 320329 + PIR42293
Exon structure




28291630 351355 + DUSP22
Exon structure
Hs.29106 56940 ENSG00000112679 dual specificity phosphatase 22
29329769 335021 + LOC105374871
Exon structure

105374871

30335214 339827 - GC06M000335



31348115 348141 + PIR35740
Exon structure




32348198 348225 + PIR49830
Exon structure




33355564 355594 - PIR52831
Exon structure




34355564 355594 - GC06M000356



35356608 363395 + LOC105374872
Exon structure

105374872

36367828 371655 + GC06P000367



37372245 372271 - PIR47067
Exon structure




38372331 372361 - PIR37517
Exon structure




39364143 380671 - LOC105375104
Exon structure

105375104

40362932 386950 - GC06M000362



41376493 376519 + PIR61905
Exon structure




42383121 383631 - GC06M000383



43391739 411447 + IRF4
Exon structure
Hs.401013 3662 ENSG00000137265 interferon regulatory factor 4
44406626 409705 + GC06P000406



45444487 444855 + GC06P000444



46446960 446986 - PIR55434
Exon structure




47449900 451350 + GC06P000449



48461864 468111 + GC06P000461



49451012 486528 + LOC105374875
Exon structure

105374875

50481970 482301 + GC06P000481



51524171 525581 + ENSG00000230433
Exon structure


ENSG00000230433
52555728 564143 - GC06M000555



53485133 693141 - EXOC2
Exon structure
Hs.484412 55770 ENSG00000112685 exocyst complex component 2
54597631 602734 + LOC105374874
Exon structure

105374874

55607651 607680 - PIR54847
Exon structure




56585040 640789 + GC06P000585



57655939 656964 - HUS1B
Exon structure
Hs.669039 135458 ENSG00000188996 HUS1 checkpoint clamp component B
58659953 660284 + GC06P000659



59669080 670307 - LOC100421511
Exon structure

100421511 ENSG00000219712
60700496 704571 - GC06M000700



61708592 711405 - ENSG00000272463
Exon structure


ENSG00000272463
62719189 719220 + GC06P000719



63729099 729313 + GC06P000730



64729314 729823 + GC06P000729



65711533 750729 + ENSG00000271727
Exon structure


ENSG00000271727
66729074 758947 - LOC105374873
Exon structure

105374873

67744394 744421 + PIR48751
Exon structure




68766666 766880 + GC06P000766



69761675 780648 + ENSG00000271911
Exon structure


ENSG00000271911
70774747 780628 - LOC105374876
Exon structure

105374876 ENSG00000272485
71868498 876613 + LOC101927691
Exon structure

101927691

72905445 909006 - ENSG00000276687
Exon structure


ENSG00000276687
73909658 909685 - PIR41244
Exon structure




74906470 915491 + LOC101927353
Exon structure

101927353

75902263 939307 + GC06P000902



76944666 944880 + GC06P000944



77995861 995890 - PIR33232
Exon structure




781018855 1019566 - GC06M001018



791026494 1027225 - GC06M001028



801026056 1029557 - LOC105374877
Exon structure

105374877 ENSG00000270937
81958324 1101332 - LOC285768
Exon structure
Hs.209463 285768 ENSG00000278343 Uncharacterized LOC285768 (est)
821048107 1049517 + GC06P001048



831056096 1056438 - GC06M001056



841079929 1104946 + ENSG00000176515
Exon structure


ENSG00000176515
851095869 1096981 + GC06P001095



861108342 1111951 + GC06P001108



871133989 1135052 - GC06M001133



881160748 1165099 + GC06P001160



891169643 1172029 + LOC105374878
Exon structure

105374878

901197815 1201428 + GC06P001197



911205983 1206205 + GC06P001205



921234522 1234863 - GC06M001234



931274685 1276704 - GC06M001274



941284931 1305966 - LOC105374879
Exon structure

105374879

951308586 1311682 - GC06M001309



961312440 1314758 + FOXQ1
Exon structure
Hs.591352 94234 ENSG00000164379 forkhead box Q1
971321698 1324022 - LINC01394
Exon structure

106144586 ENSG00000281809 long intergenic non-protein coding RNA 1394
981321236 1335651 - LOC105374881
Exon structure

105374881

991331397 1331424 + PIR53094
Exon structure




1001358051 1372016 - GC06M001358



1011380206 1383815 + GC06P001380



1021383790 1389470 - LOC105374880
Exon structure

105374880 ENSG00000261730
1031385909 1388671 - GC06M001386



1041390314 1390411 - MIR6720
Exon structure

102466720 ENSG00000275859 microRNA 6720
1051389834 1395597 + FOXF2
Exon structure
Hs.484423 2295 ENSG00000137273 forkhead box F2
1061396563 1397889 - GC06M001396



1071387679 1407488 + GC06P001387



1081405853 1406916 - GC06M001405



1091423166 1425430 - GC06M001423



1101441512 1443510 - GC06M001441



1111456767 1456809 + PIR58610
Exon structure




1121457901 1458893 - GC06M001457



1131471669 1472492 - GC06M001471



1141474602 1476867 - GC06M001474



1151489489 1492524 + LOC105374883
Exon structure

105374883

1161453286 1555226 - LOC102723944
Exon structure

102723944

1171507322 1507598 + RN7SL352P
Exon structure

106479352 ENSG00000243439 RNA, 7SL, cytoplasmic 352, pseudogene
1181512341 1515565 - ELF2P2
Exon structure

260335 ENSG00000218027 E74-like factor 2 pseudogene 2
1191528364 1528911 - ENSG00000272279
Exon structure


ENSG00000272279
1201529123 1544090 + LOC105374882
Exon structure

105374882

1211550677 1555435 - GC06M001550



1221600079 1604751 + GC06P001600



1231605531 1607358 + FOXCUT
Exon structure

101927703 ENSG00000280916 FOXC1 upstream transcript (non-protein coding)
1241610661 1610979 + GC06P001611



1251609972 1613897 + FOXC1
Exon structure
Hs.348883 2296 ENSG00000054598 forkhead box C1
1261612342 1613892 + GC06P001612



1271618637 1675832 + GC06P001618



1281675206 1679368 + GC06P001675



1291696629 1696657 - PIR36904
Exon structure




1301721858 1724164 + GC06P001721



1311726935 1728872 - GC06M001726



1321781928 1782181 + GC06P001781



1331810690 1814822 - GC06M001810



1341819704 1819734 + PIR34123
Exon structure




1351828162 1828985 - GC06M001828



1361855239 1858263 + LOC105374884
Exon structure

105374884

1371855674 1869191 + GC06P001858



1381856392 1869943 + GC06P001856



1391856806 1870321 + GC06P001857



1401900087 1900113 - PIR38406
Exon structure




1411623800 2245692 - GMDS
Exon structure
Hs.144496; Hs.660919 2762 ENSG00000112699 GDP-mannose 4,6-dehydratase
1421930866 1944383 + GC06P001930



1431948526 1949015 - GC06M001948



1441949255 1949744 - GC06M001949



1451967239 1967728 - GC06M001967



1461986312 1987877 - GC06M001986



1471989536 2012355 - GC06M001989



1481917156 2090470 - GC06M001917



1492003689 2004178 - GC06M002003



1502031716 2035878 + GC06P002031



1512037478 2037967 - GC06M002037



1522064022 2086470 - GC06M002064



1532118220 2123470 - GC06M002118



1542167666 2168155 - GC06M002167



1552194288 2197749 + GC06P002194



1562271610 2275011 + GC06P002272



1572287356 2300869 + GC06P002289



1582317901 2324599 + GC06P002317



1592292452 2379110 - GC06M002292



1602323938 2352190 - GC06M002323



1612336459 2342129 + GC06P002336



1622341357 2342500 + HMGN2P28
Exon structure

100128372 ENSG00000236086 high mobility group nucleosomal binding domain 2 pseudogene 28
1632345553 2345584 + GC06P002345



1642356732 2362390 + GC06P002357



1652245748 2482022 + GMDS-AS1
Exon structure
Hs.188825 100508120 ENSG00000250903 GMDS antisense RNA 1 (head to head)
1662370105 2375769 + GC06P002370



1672373246 2378973 + GC06P002373



1682407152 2408889 + GC06P002407



1692409536 2409635 - ENSG00000266252
Exon structure


ENSG00000266252
1702396590 2424765 - GC06M002396



1712426958 2430941 + GC06P002426



1722434915 2435352 - GC06M002434



1732437549 2438249 + ENSG00000272465
Exon structure


ENSG00000272465
1742446018 2446036 + GC06P002446



1752450400 2453801 + GC06P002450



1762462000 2462026 + PIR61847
Exon structure




1772471134 2474954 + GC06P002471



1782479504 2480289 - GC06M002479



1792482712 2485987 + GC06P002482



1802417044 2567809 - GC06M002417



1812500344 2500372 + PIR59473
Exon structure




1822529545 2529767 - GC06M002529



1832533094 2537506 + GC06P002533



1842536456 2542126 + GC06P002536



1852544198 2548289 + GC06P002544



1862561947 2564143 + ENSG00000280423
Exon structure


ENSG00000280423
1872561947 2564143 - GC06M002561



1882569773 2569995 - GC06M002569



1892584620 2585398 + GC06P002584



1902602403 2602436 + GC06P002602



1912605918 2609903 + GC06P002605



1922614933 2615156 - GC06M002614



1932623198 2623968 + GC06P002623



1942621913 2635064 - LINC01600
Exon structure
Hs.680574 154386 ENSG00000164385 long intergenic non-protein coding RNA 1600
1952629267 2642796 + LOC105374885
Exon structure

105374885 ENSG00000228718
1962638767 2638795 + PIR55810
Exon structure




1972649272 2652550 + GC06P002649



1982652544 2652981 - GC06M002652



1992657990 2658258 - GC06M002657



2002666444 2666479 + GC06P002666



2012670686 2670954 - GC06M002670



2022710990 2714975 + GC06P002711



2032663629 2770123 - MYLK4
Exon structure
Hs.127830 340156 ENSG00000145949 myosin light chain kinase family, member 4
2042701070 2761280 - GC06M002701



2052732478 2733656 + GC06P002732



2062738016 2741477 + GC06P002738



2072765279 2765307 + PIR54135
Exon structure




2082769538 2770716 + GC06P002769



2092765341 2786952 + WRNIP1
Exon structure
Hs.236828 56897 ENSG00000124535 Werner helicase interacting protein 1
2102790732 2805235 - LOC105374886
Exon structure

105374886

2112811670 2813131 + GC06P002811



2122815338 2818739 + GC06P002815



2132818552 2819730 + GC06P002818



2142832332 2842049 - SERPINB1
Exon structure
Hs.381167 1992 ENSG00000021355 serpin peptidase inhibitor, clade B (ovalbumin), member 1
2152854031 2854107 - MIR4645
Exon structure

100616285 ENSG00000266750 microRNA 4645
2162858164 2858190 - PIR43328
Exon structure




2172854657 2881407 - SERPINB9P1
Exon structure
Hs.8162 221756 ENSG00000230438 serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1
2182879691 2879719 + PIR60730
Exon structure




2192883988 2900676 + LOC101927730
Exon structure

101927730

2202887265 2903312 - SERPINB9
Exon structure
Hs.104879 5272 ENSG00000170542 serpin peptidase inhibitor, clade B (ovalbumin), member 9
2212908867 2908897 + GC06P002908



2222908956 2912234 + GC06P002909



2232910613 2912113 - ENSG00000232999
Exon structure


ENSG00000232999
2242916894 2917733 + ENSG00000228365
Exon structure


ENSG00000228365
2252906852 2943151 - GC06M002906



2262940398 2941406 + LOC105374887
Exon structure

105374887

2272948426 2949604 + GC06P002948



2282953149 2953179 - GC06M002954



2292953149 2953179 - PIR46440
Exon structure




2302948159 2972165 - SERPINB6
Exon structure
Hs.519523 5269 ENSG00000124570 serpin peptidase inhibitor, clade B (ovalbumin), member 6
2312970690 2974673 + GC06P002970



2322979122 2979617 + GC06P002979



2332987967 2991173 + LINC01011
Exon structure
Hs.720158 401232 ENSG00000244041 long intergenic non-protein coding RNA 1011
2342989722 2999292 - LOC105374888
Exon structure

105374888 ENSG00000224846
2352987987 3028869 + NQO2
Exon structure
Hs.533050; Hs.145597 4835 ENSG00000124588 NAD(P)H dehydrogenase, quinone 2
2362980728 3036963 + GC06P002980



2373020156 3024771 - HTATSF1P2
Exon structure
Hs.441039; Hs.745279 401233 ENSG00000271361 HIV-1 Tat specific factor 1 pseudogene 2
2383025694 3027434 + LOC101927759
Exon structure

101927759

2393033183 3033288 + ENSG00000274855
Exon structure


ENSG00000274855
2403040276 3048426 + GC06P003040



2413045384 3045800 + FAM136BP
Exon structure

387071 ENSG00000232654 family with sequence similarity 136, member B, pseudogene
2423048835 3049234 + SERPINB8P1
Exon structure

11029 ENSG00000217707 serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1
2433055977 3056003 + PIR47178
Exon structure




2443055890 3056761 + ENSG00000229282
Exon structure


ENSG00000229282
2453068045 3068894 - ENSG00000272277
Exon structure


ENSG00000272277
2463076732 3076945 + GC06P003076



2473076758 3078574 - GC06M003076



2483080878 3081833 + GC06P003080



2493088686 3088809 - RNA5SP201
Exon structure

100873462 ENSG00000222248 RNA, 5S ribosomal pseudogene 201
2503088942 3089897 + GC06P003088



2513063967 3115187 + RIPK1
Exon structure
Hs.519842 8737 ENSG00000137275 receptor (TNFRSF)-interacting serine-threonine kinase 1
2523112989 3113015 + PIR43479
Exon structure




2533114446 3121835 + GC06P003115



2543118374 3153578 + BPHL
Exon structure
Hs.10136 670 ENSG00000137274 biphenyl hydrolase-like (serine hydrolase)
2553095938 3190847 - GC06M003095



2563138394 3153062 - ENSG00000228170
Exon structure


ENSG00000228170
2573153868 3154892 - GC06M003154



2583153868 3154892 - GC06M003155



2593153666 3157549 - TUBB2A
Exon structure
Hs.654543 7280 ENSG00000137267 tubulin, beta 2A class IIa
2603157676 3158702 + LOC105374889
Exon structure

105374889

2613150604 3184064 + GC06P003150



2623177039 3179764 - TUBB2BP1
Exon structure

100132153 ENSG00000216819 tubulin, beta 2B class IIb pseudogene 1
2633182744 3195767 - LOC100507194
Exon structure
Hs.678053 100507194 ENSG00000230269 Uncharacterized LOC100507194 (est)
2643208680 3211806 + GC06P003208



2653221344 3221766 + GC06P003221



2663221346 3221770 + GC06P003222



2673224285 3225484 - GC06M003225



2683224285 3225484 - GC06M003227



2693224495 3225327 - GC06M003229



2703224559 3225480 - GC06M003226



2713224261 3231730 - TUBB2B
Exon structure
Hs.300701 347733 ENSG00000137285 tubulin, beta 2B class IIb
2723263745 3263774 + PIR45758
Exon structure




2733231403 3303373 + PSMG4
Exon structure
Hs.207069; Hs.731726 389362 ENSG00000180822 proteasome (prosome, macropain) assembly chaperone 4
2743268072 3268099 + PIR34454
Exon structure




2753269684 3269710 - PIR47461
Exon structure




2763292665 3292878 + GC06P003292



2773304873 3305828 + GC06P003304



2783307941 3307970 + PIR62094
Exon structure




2793309250 3313650 + LOC105374891
Exon structure

105374891 ENSG00000272320
2803328794 3329083 - GC06M003328



2813268962 3457022 - SLC22A23
Exon structure
Hs.713588 63027 ENSG00000137266 solute carrier family 22, member 23
2823358578 3405883 - GC06M003358



2833410719 3417979 + LOC105374890
Exon structure

105374890

2843429419 3429708 - GC06M003429



2853458703 3469212 + LOC643327
Exon structure
Hs.631820 643327
Uncharacterized LOC643327 (est)
2863478636 3485953 + GC06P003478



2873514360 3514388 + PIR56392
Exon structure




2883534160 3573896 - GC06M003534



2893588984 3720074 - LOC100507336
Exon structure
Hs.104944 100507336 ENSG00000228793 Uncharacterized LOC100507336 (est)