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#	Start (bp)	End (bp)	Strand	Gene	Unigene cluster	Entrez Gene Id	Ensembl Id	Description
1	53457126	53525502	-	USP46 Exon structure	Hs.7966	64854	ENSG00000109189	ubiquitin specific peptidase 46
2	53522831	53527835	+	USP46-AS1 Exon structure	Hs.631514	643783	ENSG00000248866	USP46 antisense RNA 1
3	53546776	53558816	+	ENSG00000260120 Exon structure			ENSG00000260120
4	53578482	53579126	-	GC04M053579
5	53578849	53578914	+	MIR4449 Exon structure		100616436	ENSG00000264585	microRNA 4449
6	53578664	53579296	+	GC04P053589
7	53579406	53579537	+	GC04P053587
8	53579416	53579537	+	SNORA26 Exon structure	Hs.635034	677810	ENSG00000212588	small nucleolar RNA, H/ACA box 26
9	53578597	53586518	+	DANCR Exon structure	Hs.744077	57291	ENSG00000226950	differentiation antagonizing non-protein coding RNA
10	53586248	53586998	-	ENSG00000248375 Exon structure			ENSG00000248375
11	53588785	53617807	-	ERVMER34-1 Exon structure	Hs.363087	100288413	ENSG00000226887	endogenous retrovirus group MER34, member 1
12	53614303	53614426	+	GC04P053615
13	53614304	53614426	+	ENSG00000212490 Exon structure			ENSG00000212490
14	53617314	53617379	-	ENSG00000266656 Exon structure			ENSG00000266656
15	53652703	53652803	+	GC04P053653
16	53652704	53652805	+	ENSG00000199901 Exon structure			ENSG00000199901
17	53656161	53681631	+	LOC152578 Exon structure	Hs.383806	152578	ENSG00000250302	Uncharacterized LOC152578 (est)
18	53728676	53728702	-	PIR51358 Exon structure
19	53728457	53733002	+	RASL11B Exon structure	Hs.8035	65997	ENSG00000128045	RAS-like, family 11, member B
20	53811820	53817189	+	GC04P053814
21	53811816	53824254	+	ENSG00000248115 Exon structure			ENSG00000248115
22	53948934	53948960	-	PIR32665 Exon structure
23	53739149	54232242	-	SCFD2 Exon structure	Hs.302287	152579	ENSG00000184178	sec1 family domain containing 2
24	54122812	54122840	+	PIR49161 Exon structure
25	54131627	54131734	-	GC04M054132
26	54131628	54131734	-	ENSG00000207385 Exon structure			ENSG00000207385
27	54327277	54330581	+	GC04P054329
28	54362567	54415745	+	LNX1-AS1 Exon structure	Hs.662372	100873939	ENSG00000250930	LNX1 antisense RNA 1
29	54425319	54425345	+	PIR61049 Exon structure
30	54441880	54442554	+	ENSG00000173966 Exon structure			ENSG00000173966
31	54325468	54567572	-	LNX1 Exon structure	Hs.518760	84708	ENSG00000072201	ligand of numb-protein X 1, E3 ubiquitin protein ligase
32	54459123	54470214	+	LNX1-AS2 Exon structure	Hs.351074	100873955	ENSG00000248494	LNX1 antisense RNA 2
33	54525375	54603323	+	LOC100506444 Exon structure	Hs.636176	100506444	ENSG00000249341	Uncharacterized LOC100506444 (est)
34	54596072	54598379	+	GC04P054597
35	54243810	55161439	+	FIP1L1 Exon structure	Hs.624245	81608	ENSG00000145216	FIP1 like 1 (S. cerevisiae)
36	54766038	54783002	+	ENSG00000249706 Exon structure			ENSG00000249706
37	54774211	54794317	-	LOC100129728 Exon structure		100129728	ENSG00000250815
38	54851653	54853449	-	RPL21P44 Exon structure	Hs.452943	402176	ENSG00000229585	ribosomal protein L21 pseudogene 44
39	54863261	54868515	-	GC04M054864
40	54881959	54882241	+	GC04P054883
41	54875956	54930857	-	CHIC2 Exon structure	Hs.335393	26511	ENSG00000109220	cysteine-rich hydrophobic domain 2
42	54925763	54927377	+	GC04P054926
43	54935107	54944022	-	GC04M054936
44	54942792	54943015	+	ENSG00000251105 Exon structure			ENSG00000251105
45	54952852	54954618	+	MORF4L2P1 Exon structure		643915	ENSG00000250147	mortality factor 4 like 2 pseudogene 1
46	54965690	54968672	+	GSX2 Exon structure	Hs.371899	170825	ENSG00000180613	GS homeobox 2
47	54969747	54969823	-	ENSG00000221219 Exon structure			ENSG00000221219
48	54989267	54989371	-	ENSG00000238753 Exon structure			ENSG00000238753
49	55087290	55087639	+	RPL22P13 Exon structure		442108	ENSG00000242670	ribosomal protein L22 pseudogene 13
50	55095457	55124947	+	GC04P055099
51	55095264	55164414	+	PDGFRA Exon structure	Hs.74615	5156	ENSG00000134853	platelet-derived growth factor receptor, alpha polypeptide
52	55199059	55222121	+	ENSG00000248184 Exon structure			ENSG00000248184
53	55242169	55242919	+	ENSG00000248518 Exon structure			ENSG00000248518
54	55306669	55312890	-	ENSG00000251264 Exon structure			ENSG00000251264
55	55470534	55470561	-	PIR36071 Exon structure
56	55469378	55473298	-	ENSG00000250456 Exon structure			ENSG00000250456
57	55500926	55500956	+	PIR51098 Exon structure
58	55524085	55606881	+	KIT Exon structure	Hs.479754	3815	ENSG00000157404	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
59	55625183	55625213	+	PIR58416 Exon structure
60	55702327	55711568	-	ENSG00000249727 Exon structure			ENSG00000249727
61	55711734	55725407	+	ENSG00000251256 Exon structure			ENSG00000251256
62	55809796	55822985	+	ENSG00000248317 Exon structure			ENSG00000248317
63	55842282	55842564	-	RPL38P3 Exon structure		100132311	ENSG00000244422	ribosomal protein L38 pseudogene 3
64	55877000	55877099	-	ENSG00000264332 Exon structure			ENSG00000264332
65	55898132	55898238	-	ENSG00000252815 Exon structure			ENSG00000252815
66	55929902	55930196	+	ENSG00000244034 Exon structure			ENSG00000244034
67	55935541	55935569	+	PIR53985 Exon structure
68	55919227	55958701	+	ENSG00000250646 Exon structure			ENSG00000250646
69	55944426	55991762	-	KDR Exon structure	Hs.479756	3791	ENSG00000128052	kinase insert domain receptor (a type III receptor tyrosine kinase)
70	56081793	56082079	-	ENSG00000239545 Exon structure			ENSG00000239545
71	56085511	56086140	+	LOC100128865 Exon structure		100128865	ENSG00000250812
72	56160656	56160765	+	GC04P056161
73	56160657	56160765	+	ENSG00000206839 Exon structure			ENSG00000206839
74	56179178	56180091	-	LOC100420613 Exon structure		100420613	ENSG00000250464
75	56217980	56218575	-	FCF1P8 Exon structure		100422531	ENSG00000251111	FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 8
76	56219943	56219972	+	PIR32131 Exon structure
77	56212276	56239263	+	SRD5A3 Exon structure	Hs.39311	79644	ENSG00000128039	steroid 5 alpha-reductase 3
78	56230138	56262009	-	SRD5A3-AS1 Exon structure	Hs.718667	100506462	ENSG00000249700	SRD5A3 antisense RNA 1
79	56244391	56254858	+	GC04P056245
80	56262090	56292342	+	TMEM165 Exon structure	Hs.479766	55858	ENSG00000134851	transmembrane protein 165
81	56277189	56277313	-	ENSG00000203615 Exon structure			ENSG00000203615
82	56278802	56278903	+	GC04P056279
83	56278803	56278905	+	ENSG00000239040 Exon structure			ENSG00000239040
84	56287451	56289843	+	LOC100506486 Exon structure	Hs.662149	100506486		Uncharacterized LOC100506486 (est)
85	56294611	56294637	-	PIR45008 Exon structure
86	56294192	56297269	-	GC04M056304
87	56294073	56297591	-	GC04M056303
88	56298313	56298343	-	PIR52615 Exon structure
89	56294070	56413305	-	CLOCK Exon structure	Hs.689578; Hs.436975	9575	ENSG00000134852	clock circadian regulator
90	56367762	56367875	-	ENSG00000238585 Exon structure			ENSG00000238585
91	56367763	56367875	-	GC04M056368
92	56406669	56407002	-	ENSG00000223305 Exon structure			ENSG00000223305
93	56422692	56458379	-	PDCL2 Exon structure	Hs.223712	132954	ENSG00000163440	phosducin-like 2
94	56461396	56502865	-	NMU Exon structure	Hs.418367	10874	ENSG00000109255	neuromedin U
95	56664802	56664897	+	ENSG00000251923 Exon structure			ENSG00000251923
96	56686236	56703430	+	GC04P056687
97	56686169	56703548	+	LOC644145 Exon structure	Hs.570825	644145	ENSG00000250821	Exocyst complex component 1 pseudogene (est)
98	56719782	56771244	+	EXOC1 Exon structure	Hs.269665	55763	ENSG00000090989	exocyst complex component 1
99	56751761	56751867	+	ENSG00000202358 Exon structure			ENSG00000202358
100	56751760	56751867	+	GC04P056752
101	56796148	56796239	+	ENSG00000222954 Exon structure			ENSG00000222954
102	56804559	56814177	-	GC04M056805
103	56814121	56815341	-	GC04M056816
104	56828899	56829220	+	GC04P056831
105	56815037	56899527	+	CEP135 Exon structure	Hs.518767	9662	ENSG00000174799	centrosomal protein 135kDa
106	56963555	56963670	+	GC04P056966
107	56963556	56963670	+	RNA5SP161 Exon structure		hugo355	ENSG00000200741	RNA, 5S ribosomal pseudogene 161
108	57095799	57112587	-	GC04M057097
109	57036361	57196890	+	KIAA1211 Exon structure	Hs.596667	57482	ENSG00000109265	KIAA1211
110	57154651	57154750	-	ENSG00000252489 Exon structure			ENSG00000252489
111	57181881	57181910	+	PIR57694 Exon structure
112	57186813	57187500	-	MRPL22P1 Exon structure		359738	ENSG00000250324	mitochondrial ribosomal protein L22 pseudogene 1
113	57197343	57197383	-	RNA5SP162 Exon structure		100873427	ENSG00000251823	RNA, 5S ribosomal pseudogene 162
114	57222279	57223155	+	RPL7AP31 Exon structure		728315	ENSG00000242083	ribosomal protein L7a pseudogene 31
115	57204456	57253666	-	AASDH Exon structure	Hs.104347	132949	ENSG00000157426	aminoadipate-semialdehyde dehydrogenase
116	57259528	57301845	-	PPAT Exon structure	Hs.331420	5471	ENSG00000128059	phosphoribosyl pyrophosphate amidotransferase
117	57276808	57285944	+	LOC100506514 Exon structure	Hs.652109	100506514		Uncharacterized LOC100506514 (est)
118	57302404	57302484	+	GC04P057306
119	57301907	57327534	+	PAICS Exon structure	Hs.709570; Hs.518774	10606	ENSG00000128050	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase
120	57333081	57369847	+	SRP72 Exon structure	Hs.237825	6731	ENSG00000174780	signal recognition particle 72kDa
121	57371375	57390058	+	ARL9 Exon structure	Hs.444449	132946	ENSG00000196503	ADP-ribosylation factor-like 9
122	57396775	57469673	+	THEGL Exon structure	Hs.573073	100506564	ENSG00000249693	theg spermatid protein-like
123	57458631	57462431	+	GLDCP1 Exon structure		2732	ENSG00000248590	glycine dehydrogenase (decarboxylase) pseudogene 1
124	57488954	57492377	+	GC04P057490
125	57514709	57522067	-	GC04M057518
126	57514154	57548065	-	HOPX Exon structure	Hs.619396	84525	ENSG00000171476	HOP homeobox
127	57576187	57576812	+	RPL17P20 Exon structure		391655	ENSG00000241250	ribosomal protein L17 pseudogene 20
128	57578548	57578577	+	PIR42353 Exon structure