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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 4

   GeneLoc map region (1,074,510 - 5,243,960 bp) around gene/marker "HTT"

   Explanation:
   HTT is located at 3,074,510-3,243,960 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
11056248 1113794 - RNF212
Exon structure
Hs.248290 285498 ENSG00000178222 ring finger protein 212
21100016 1101558 - ENSG00000251639
Exon structure


ENSG00000251639
31100044 1101702 - LOC100421802
Exon structure

100421802

41118883 1119013 + GC04P001120



51118884 1119013 + ENSG00000212458
Exon structure


ENSG00000212458
61113639 1132977 + LOC105374344
Exon structure

105374344 ENSG00000251652
71115197 1153726 - TMED11P
Exon structure
Hs.635208 100379220 ENSG00000215367 transmembrane p24 trafficking protein 11, pseudogene
81151372 1153701 + ENSG00000227189
Exon structure


ENSG00000227189
91157772 1157799 + PIR56304
Exon structure




101167778 1168174 + ENSG00000273179
Exon structure


ENSG00000273179
111146930 1193671 + GC04P001147



121166932 1208962 - SPON2
Exon structure
Hs.635350 10417 ENSG00000159674 spondin 2, extracellular matrix protein
131200379 1201262 - LOC101928548
Exon structure

101928548

141195783 1208962 - LOC100130872
Exon structure
Hs.302963 100130872
Uncharacterized LOC100130872 (est)
151210120 1218591 + CTBP1-AS
Exon structure
Hs.707614 285463 ENSG00000280927 CTBP1 antisense RNA
161211440 1250248 - CTBP1
Exon structure
Hs.208597 1487 ENSG00000159692 C-terminal binding protein 1
171234725 1237856 - LOC101928588
Exon structure

101928588

181251255 1251282 + PIR37123
Exon structure




191256420 1270109 + LOC105374345
Exon structure

105374345

201249300 1288291 + CTBP1-AS2
Exon structure
Hs.561314 92070 ENSG00000196810 CTBP1 antisense RNA 2 (head to head)
211268784 1268820 + GC04P001268



221285614 1289704 - LOC105374347
Exon structure

105374347

231287686 1288290 + LOC105374346
Exon structure

105374346

241299490 1302285 - GC04M001299



251306568 1311667 - GC04M001306



261289851 1340148 + MAEA
Exon structure
Hs.139896 10296 ENSG00000090316 macrophage erythroblast attacher
271316882 1319546 - GC04M001316



281321236 1322435 + GC04P001322



291323178 1327620 - LOC101928621
Exon structure

101928621

301328072 1328098 + PIR40977
Exon structure




311338662 1340564 - GC04M001338



321342794 1346877 - GC04M001342



331356581 1358075 + ENSG00000254094
Exon structure


ENSG00000254094
341358479 1359461 + ENSG00000253399
Exon structure


ENSG00000253399
351345658 1388049 + UVSSA
Exon structure
Hs.380475 57654 ENSG00000163945 UV-stimulated scaffold protein A
361365968 1368902 - GC04M001365



371386086 1386112 + PIR51593
Exon structure




381392949 1392978 + PIR51310
Exon structure




391391552 1395994 + CRIPAK
Exon structure
Hs.26410 285464 ENSG00000179979 cysteine-rich PAK1 inhibitor
401394554 1394580 + PIR54652
Exon structure




411402932 1406442 - NKX1-1
Exon structure
Hs.526396 54729 ENSG00000235608 NK1 homeobox 1
421409469 1409619 + GC04P001409



431500920 1503642 - LOC105374348
Exon structure

105374348

441514823 1515410 - GC04M001514



451508115 1528832 - GC04M001508



461518207 1518949 - GC04M001518



471545258 1553564 + GC04P001545



481550284 1550572 + ENSG00000272783
Exon structure


ENSG00000272783
491560333 1561181 + GC04P001560



501574062 1580253 - ENSG00000244459
Exon structure


ENSG00000244459
511577429 1578295 + GC04P001577



521623704 1626874 - LOC105374350
Exon structure

105374350

531627370 1629063 - LOC105374349
Exon structure

105374349

541574062 1684313 - FAM53A
Exon structure
Hs.143314 152877 ENSG00000174137 family with sequence similarity 53, member A
551683421 1683529 - GC04M001683



561683420 1683529 - ENSG00000207009
Exon structure


ENSG00000207009
571683693 1683722 - PIR55509
Exon structure




581691047 1692392 + GC04P001691



591697883 1698678 - GC04M001697



601692800 1712694 - SLBP
Exon structure
Hs.298345 7884 ENSG00000163950 stem-loop binding protein
611705139 1705170 + GC04P001705



621712821 1713622 + ENSG00000270195
Exon structure


ENSG00000270195
631715952 1721358 - TMEM129
Exon structure
Hs.518562 92305 ENSG00000168936 transmembrane protein 129, E3 ubiquitin protein ligase
641720221 1720247 - PIR44595
Exon structure




651721490 1745178 + TACC3
Exon structure
Hs.104019 10460 ENSG00000013810 transforming, acidic coiled-coil containing protein 3
661739351 1742103 + GC04P001740



671751385 1753007 - GC04M001751



681793299 1808872 + FGFR3
Exon structure
Hs.1420 2261 ENSG00000068078 fibroblast growth factor receptor 3
691802913 1803064 + GC04P001802



701809195 1813200 - GC04M001809



711823092 1823122 - GC04M001823



721811479 1856247 - LETM1
Exon structure
Hs.120165 3954 ENSG00000168924 leucine zipper-EF-hand containing transmembrane protein 1
731843166 1843193 - PIR36092
Exon structure




741850713 1870254 + GC04P001850



751869153 1869214 - RN7SL671P
Exon structure

106479467 ENSG00000240455 RNA, 7SL, cytoplasmic 671, pseudogene
761869060 1869337 - GC04M001869



771890671 1893751 + GC04P001890



781871396 1982207 + WHSC1
Exon structure
Hs.113876 7468 ENSG00000109685 Wolf-Hirschhorn syndrome candidate 1
791940877 1940904 + PIR46454
Exon structure




801943631 1943659 + PIR44856
Exon structure




811943949 1946165 + GC04P001947



821960041 1960386 - GC04M001960



831961920 1961948 - PIR46677
Exon structure




841961679 1963387 + GC04P001961



851967091 1967665 - GC04M001967



861974636 1974760 + SCARNA22
Exon structure
Hs.676951 677770 ENSG00000249784 small Cajal body-specific RNA 22
871974635 1974760 + GC04P001975



881974635 1974760 + GC04P001974



891986384 1986477 - MIR943
Exon structure

100126332 ENSG00000216105 microRNA 943
901992707 1993002 + GC04P001992



911994955 1994986 + GC04P001995



921994955 1994986 + PIR44507
Exon structure




931999501 2001839 + GC04P001999



942005721 2006812 + GC04P002007



951982714 2041914 - NELFA
Exon structure
Hs.21771 7469 ENSG00000185049 negative elongation factor complex member A
962036511 2036537 - PIR61705
Exon structure




972035608 2043970 + C4orf48
Exon structure
Hs.446474 401115 ENSG00000243449 chromosome 4 open reading frame 48
982041205 2042499 + GC04P002041



992049287 2054402 - LOC105374351
Exon structure

105374351

1002053965 2058564 - GC04M002053



1012059512 2069089 + NAT8L
Exon structure
Hs.318529 339983 ENSG00000185818 N-acetyltransferase 8-like (GCN5-related, putative)
1022065905 2065932 + PIR47482
Exon structure




1032067117 2067152 + PIR47404
Exon structure




1042061355 2075072 + GC04P002062



1052088115 2090704 - LOC100419959
Exon structure

100419959

1062088718 2090617 - ENSG00000249006
Exon structure


ENSG00000249006
1072098337 2124050 - GC04M002098



1082125693 2126496 - GC04M002125



1092139673 2141058 + ENSG00000250623
Exon structure


ENSG00000250623
1102140911 2142626 + GC04P002140



1112071918 2242164 - POLN
Exon structure
Hs.368454 353497 ENSG00000130997 polymerase (DNA directed) nu
1122157269 2185106 - GC04M002157



1132213127 2232465 + GC04P002213



1142234251 2234499 + GC04P002234



1152227464 2242164 - HAUS3
Exon structure
Hs.665869 79441 ENSG00000214367 HAUS augmin-like complex, subunit 3
1162216243 2254772 - GC04M002217



1172234251 2241909 + COX6B1P5
Exon structure

100289662 ENSG00000249047 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 5
1182246572 2246600 - PIR41429
Exon structure




1192250077 2250156 - MIR4800
Exon structure

100616358 ENSG00000265080 microRNA 4800
1202252522 2252552 - PIR58500
Exon structure




1212252522 2252552 - GC04M002252



1222254409 2255148 - LOC102723755
Exon structure

102723755

1232247432 2262294 - MXD4
Exon structure
Hs.655020 10608 ENSG00000123933 MAX dimerization protein 4
1242288593 2290922 + GC04P002288



1252295584 2319089 + ENSG00000251148
Exon structure


ENSG00000251148
1262316197 2316506 - RN7SL589P
Exon structure

106479438 ENSG00000239247 RNA, 7SL, cytoplasmic 589, pseudogene
1272324467 2325086 + LOC100421664
Exon structure

100421664 ENSG00000249077
1282335455 2337396 + GC04P002335



1292267524 2418690 - ZFYVE28
Exon structure
Hs.292056 57732 ENSG00000159733 zinc finger, FYVE domain containing 28
1302342581 2344660 - LOC105374352
Exon structure

105374352

1312328615 2366194 - GC04M002328



1322385704 2385730 - PIR52561
Exon structure




1332393859 2393886 + PIR44270
Exon structure




1342409677 2410813 - GC04M002409



1352406089 2414560 + GC04P002406



1362418974 2450360 + ENSG00000206113
Exon structure


ENSG00000206113
1372418893 2462963 + CFAP99
Exon structure
Hs.443116 402160 ENSG00000249428 cilia and flagella associated protein 99
1382457355 2463065 - GC04M002457



1392463014 2466198 + LOC105374353
Exon structure

105374353 ENSG00000248399
1402484729 2523580 + GC04P002484



1412505081 2506279 - ENSG00000251229
Exon structure


ENSG00000251229
1422462220 2625320 + RNF4
Exon structure
Hs.66394 6047 ENSG00000063978 ring finger protein 4
1432564145 2564701 - GC04M002564



1442581989 2583888 + GC04P002581



1452607870 2608146 - ENSG00000248155
Exon structure


ENSG00000248155
1462615124 2615224 - ENSG00000206738
Exon structure


ENSG00000206738
1472596288 2732575 + FAM193A
Exon structure
Hs.652364 8603 ENSG00000125386 family with sequence similarity 193, member A
1482694863 2695570 + GC04P002694



1492696991 2699497 + GC04P002696



1502702807 2703789 + GC04P002702



1512730095 2730926 - GC04M002730



1522741648 2756376 - TNIP2
Exon structure
Hs.368551 79155 ENSG00000168884 TNFAIP3 interacting protein 2
1532755473 2756570 + GC04P002755



1542762938 2762970 + GC04P002762



1552766471 2767978 - GC04M002766



1562761384 2775232 + LOC102723763
Exon structure

102723763

1572773931 2773957 + PIR54366
Exon structure




1582773247 2775534 - GC04M002773



1592784478 2784505 - PIR37134
Exon structure




1602792353 2792470 - GC04M002792



1612792353 2792470 - GC04M002793



1622793023 2841098 + SH3BP2
Exon structure
Hs.167679 6452 ENSG00000087266 SH3-domain binding protein 2
1632843892 2844022 + GC04P002845



1642843892 2844022 + GC04P002844



1652843892 2844022 + GC04P002843



1662843727 2930076 + ADD1
Exon structure
Hs.183706 118 ENSG00000087274 adducin 1 (alpha)
1672904840 2904870 + PIR46708
Exon structure




1682904840 2904870 + GC04P002904



1692930560 2934868 - MFSD10
Exon structure
Hs.632581 10227 ENSG00000109736 major facilitator superfamily domain containing 10
1702934899 2961738 + NOP14-AS1
Exon structure
Hs.398178; Hs.731500 317648 ENSG00000249673 NOP14 antisense RNA 1
1712937933 2963506 - NOP14
Exon structure
Hs.627133 8602 ENSG00000087269 NOP14 nucleolar protein
1722981427 2981512 - ENSG00000278136
Exon structure


ENSG00000278136
1732963505 3040752 + GRK4
Exon structure
Hs.32959 2868 ENSG00000125388 G protein-coupled receptor kinase 4
1743003931 3003962 + GC04P003003



1753004003 3005620 - GC04M003004



1763044100 3044207 + GC04P003044



1773044101 3044207 + RNU6-204P
Exon structure

106481241 ENSG00000199335 RNA, U6 small nuclear 204, pseudogene
1783045427 3045866 + GC04P003047



1793058934 3059719 + GC04P003058



1803060247 3060539 - GC04M003060



1813060703 3061144 - GC04M003061



1823062753 3062781 - PIR39370
Exon structure




1833063471 3063701 + GC04P003064



1843063472 3063701 + ENSG00000278778
Exon structure


ENSG00000278778
1853064561 3064833 - GC04M003068



1863063246 3074514 - HTT-AS
Exon structure

100750326 ENSG00000251075 HTT antisense RNA (head to head)
1873069977 3070151 + ENSG00000274693
Exon structure


ENSG00000274693
1883072419 3072451 - GC04M003072



1893072419 3072451 - PIR60190
Exon structure




1903074455 3074515 + GC04P003074



1913078481 3078531 - GC04M003078



1923078484 3078542 - RNU7-33P
Exon structure

100147820
RNA, U7 small nuclear 33 pseudogene
1933105725 3106075 - GC04M003105



1943121409 3123592 + GC04P003121



1953145145 3153958 - GC04M003145



1963074510 3243960 + HTT
Exon structure
Hs.518450 3064 ENSG00000197386 huntingtin
1973241598 3271738 + MSANTD1
Exon structure
Hs.442291 345222 ENSG00000188981 Myb/SANT-like DNA-binding domain containing 1
1983284851 3288242 - GC04M003284



1993297551 3297581 + GC04P003297



2003297551 3297581 + PIR53147
Exon structure




2013312421 3313058 + LOC100286945
Exon structure

100286945 ENSG00000248840
2023323926 3324782 - RPL7AP29
Exon structure

100271043 ENSG00000248843 ribosomal protein L7a pseudogene 29
2033323977 3324762 - GC04M003323



2043292978 3439913 + RGS12
Exon structure
Hs.527061 6002 ENSG00000159788 regulator of G-protein signaling 12
2053368569 3368677 - GC04M003368



2063369113 3369141 - PIR55428
Exon structure




2073428091 3428120 + PIR36896
Exon structure




2083431206 3431232 + PIR44828
Exon structure




2093441887 3449495 + HGFAC
Exon structure
Hs.104 3083 ENSG00000109758 HGF activator
2103450104 3453280 + LOC105374354
Exon structure

105374354

2113463333 3470175 + GC04P003463



2123474938 3476390 - LOC105374355
Exon structure

105374355

2133478887 3481290 - GC04M003478



2143463306 3501476 + DOK7
Exon structure
Hs.701584; Hs.122110 285489 ENSG00000175920 docking protein 7
2153490605 3491242 + GC04P003490



2163503597 3504457 - ENSG00000261643
Exon structure


ENSG00000261643
2173509134 3509899 - GC04M003509



2183509134 3509899 - GC04M003519



2193510898 3510928 - PIR51085
Exon structure




2203510898 3510928 - GC04M003516



2213511162 3511191 - PIR35299
Exon structure




2223503597 3532559 - LRPAP1
Exon structure
Hs.40966 4043 ENSG00000163956 low density lipoprotein receptor-related protein associated protein 1
2233538044 3538418 + ENSG00000280230
Exon structure


ENSG00000280230
2243539640 3539671 + GC04P003540



2253544555 3548796 + LOC105374356
Exon structure

105374356 ENSG00000270090
2263576869 3590985 + LINC00955
Exon structure
Hs.145563 285492 ENSG00000216560 long intergenic non-protein coding RNA 955
2273604649 3606927 + GC04P003604



2283604649 3606927 + GC04P003605



2293604649 3606927 + GC04P003606



2303613841 3614339 + GC04P003613



2313633029 3633975 + ENSG00000250681
Exon structure


ENSG00000250681
2323640471 3643741 - GC04M003640



2333645103 3653896 + LOC105374357
Exon structure

105374357

2343673593 3677855 - LOC100133461
Exon structure
Hs.554274 100133461 ENSG00000250632 Uncharacterized LOC100133461 (est)
2353694675 3704172 - GC04M003694



2363760407 3760438 - GC04M003763



2373760407 3760438 - PIR54762
Exon structure




2383758748 3763390 - ENSG00000250986
Exon structure


ENSG00000250986
2393766348 3768526 + ADRA2C
Exon structure
Hs.123022 152 ENSG00000184160 adrenoceptor alpha 2C
2403863187 3888615 + GC04P003863



2413889356 3890249 - GC04M003889



2423889303 3890327 - OR7E163P
Exon structure

100131415 ENSG00000251166 olfactory receptor, family 7, subfamily E, member 163, pseudogene
2433901506 3902540 - OR7E162P
Exon structure

442101 ENSG00000234386 olfactory receptor, family 7, subfamily E, member 162 pseudogene
2443910283 3910604 + ENSG00000249522
Exon structure


ENSG00000249522
2453915187 3924274 - ENSG00000271977
Exon structure


ENSG00000271977
2463921809 3922154 - GC04M003921



2473921631 3924274 - LOC100420818
Exon structure

100420818

2483915183 3955419 - ENSG00000253917
Exon structure


ENSG00000253917
2493935446 3945048 + ALG1L7P
Exon structure

728263 ENSG00000251271 asparagine-linked glycosylation 1-like 7, pseudogene
2503941760 3955428 - FAM86EP
Exon structure
Hs.591720 348926 ENSG00000251669 family with sequence similarity 86, member E, pseudogene
2513954433 3956982 + GC04P003954



2523956372 3963889 + LOC105374358
Exon structure

105374358

2533964516 3964553 + GC04P003964



2543967033 3967660 - ENPP7P9
Exon structure

100421803 ENSG00000250476 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 9
2553976729 3978984 - GC04M003976



2563988581 4006568 + LOC105374359
Exon structure

105374359

2574005304 4005334 + GC04P004005



2584021055 4053150 - GC04M004021



2594042553 4042581 + GC04P004042



2604032391 4074289 + LOC101928217
Exon structure

101928217

2614060326 4060344 + GC04P004060



2624029056 4107936 - LOC100130459
Exon structure

100130459

2634076667 4077515 - RPS3AP16
Exon structure

727951
ribosomal protein S3a pseudogene 16
2644076711 4077491 - ENSG00000243894
Exon structure


ENSG00000243894
2654084334 4084481 + ENSG00000221301
Exon structure


ENSG00000221301
2664086638 4086814 + ENSG00000250940
Exon structure


ENSG00000250940
2674087291 4088393 + GC04P004087



2684087291 4088393 + GC04P004090



2694108291 4108317 + PIR31961
Exon structure




2704117925 4118284 - ENSG00000248669
Exon structure


ENSG00000248669
2714126659 4127569 - GC04M004127



2724126606 4127630 - OR4D12P
Exon structure

282754 ENSG00000198787 olfactory receptor, family 4, subfamily D, member 12 pseudogene
2734143458 4150421 - UNC93B4
Exon structure

643384 ENSG00000250381 unc-93 homolog B4 pseudogene (C. elegans)
2744145571 4150707 - GC04M004147



2754156522 4157443 - GC04M004156



2764156479 4157503 - OR7E99P
Exon structure

81419 ENSG00000250710 olfactory receptor, family 7, subfamily E, member 99 pseudogene
2774158697 4161253 - GC04M004162



2784163947 4165847 - GC04M004163



2794174321 4175290 - OR7E43P
Exon structure

26475 ENSG00000249844 olfactory receptor, family 7, subfamily E, member 43 pseudogene
2804189285 4189313 + PIR49722
Exon structure




2814188803 4226894 - OTOP1
Exon structure
Hs.534544 133060 ENSG00000163982 otopetrin 1
2824235542 4248242 - TMEM128
Exon structure
Hs.12845 85013 ENSG00000132406 transmembrane protein 128
2834267701 4290169 - LYAR
Exon structure
Hs.425427 55646 ENSG00000145220 Ly1 antibody reactive
2844281073 4282458 + GC04P004281



2854290197 4321786 + ZBTB49
Exon structure
Hs.419997 166793 ENSG00000168826 zinc finger and BTB domain containing 49
2864314721 4317435 - GC04M004314



2874321962 4334182 + ENSG00000248516
Exon structure


ENSG00000248516
2884333657 4333683 + PIR59167
Exon structure




2894370372 4381912 + LOC105374360
Exon structure

105374360

2904348140 4419058 + NSG1
Exon structure
Hs.518595 27065 ENSG00000168824 Neuron specific gene family member 1 (est)
2914476121 4481700 - STX18-IT1
Exon structure

104472519 ENSG00000248221 STX18 intronic transcript 1
2924415742 4542346 - STX18
Exon structure
Hs.584913 53407 ENSG00000168818 syntaxin 18
2934499369 4499396 - PIR62291
Exon structure




2944507045 4507833 + RPS7P15
Exon structure

728015 ENSG00000237170 ribosomal protein S7 pseudogene 15
2954543563 4544396 - GC04M004543



2964550905 4550933 + PIR46757
Exon structure




2974565863 4566870 + GC04P004565



2984560368 4583317 - LOC101928237
Exon structure

101928237

2994592895 4616400 + GC04P004592



3004607190 4607218 + PIR33592
Exon structure




3014542131 4710938 + STX18-AS1
Exon structure
Hs.276795 100507266 ENSG00000247708 STX18 antisense RNA 1 (head to head)
3024643857 4643888 + PIR32620
Exon structure




3034686889 4687832 - GC04M004686



3044761760 4787374 + LOC101928279
Exon structure

101928279

3054786283 4786310 + PIR47095
Exon structure




3064820405 4821452 + ENSG00000280310
Exon structure


ENSG00000280310
3074839675 4849946 + GC04P004839



3084844437 4850827 + LINC01396
Exon structure

103695434 ENSG00000273396 long intergenic non-protein coding RNA 1396
3094859665 4863936 + MSX1
Exon structure
Hs.424414 4487 ENSG00000163132 msh homeobox 1
3104888121 4895280 + GC04P004888



3114893624 4895268 - LDHAP1
Exon structure

3940 ENSG00000251587 lactate dehydrogenase A pseudogene 1
3124920770 4921064 - RN7SKP113
Exon structure

106480465 ENSG00000200761 RNA, 7SK small nuclear pseudogene 113
3134929321 4929648 + GC04P004929



3144920808 4988671 + LOC101928306
Exon structure

101928306

3154939935 4983962 + GC04P004939



3165011889 5013087 - GC04M005011



3175014586 5019472 - CYTL1
Exon structure
Hs.13872 54360 ENSG00000170891 cytokine-like 1
3185004561 5034820 + LOC105374361
Exon structure

105374361

3195121665 5159188 + GC04P005121



3205189718 5203914 - LOC105374362
Exon structure

105374362

3215051211 5500998 + STK32B
Exon structure
Hs.133062 55351 ENSG00000152953 serine/threonine kinase 32B