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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 4

   GeneLoc map region (1,076,408 - 5,245,687 bp) around gene/marker "HTT"

   Explanation:
   HTT is located at 3,076,408-3,245,687 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
11050038 1107352 - RNF212
Exon structure
Hs.248290 285498 ENSG00000178222 ring finger protein 212
21081656 1081689 - GC04M001081



31079498 1107335 - GC04M001079



41093804 1095346 - ENSG00000251639
Exon structure


ENSG00000251639
51093832 1095490 - LOC100421802
Exon structure

100421802

61112671 1112801 + GC04P001120



71112672 1112801 + ENSG00000212458
Exon structure


ENSG00000212458
81107427 1126765 + ENSG00000251652
Exon structure


ENSG00000251652
91108985 1147514 - TMED11P
Exon structure
Hs.635208 100379220 ENSG00000215367 transmembrane emp24 protein transport domain containing 11, pseudogene
101145160 1147489 + FLJ35816
Exon structure
Hs.531391 401114 ENSG00000227189 FLJ35816 protein (est)
111151560 1151587 + PIR56304
Exon structure




121161566 1161962 + ENSG00000273179
Exon structure


ENSG00000273179
131168591 1170532 + GC04P001168



141160720 1202750 - SPON2
Exon structure
Hs.635350 10417 ENSG00000159674 spondin 2, extracellular matrix protein
151189571 1202750 - LOC100130872
Exon structure
Hs.302963 100130872
Uncharacterized LOC100130872 (est)
161205702 1206838 - GC04M001206



171203908 1212379 + CTBP1-AS
Exon structure
Hs.707614 285463
CTBP1 antisense RNA
181205228 1243741 - CTBP1
Exon structure
Hs.208597 1487 ENSG00000159692 C-terminal binding protein 1
191229541 1235251 - GC04M001229



201245043 1245070 + PIR37123
Exon structure




211243088 1282079 + CTBP1-AS2
Exon structure
Hs.561314 92070 ENSG00000196810 CTBP1 antisense RNA 2 (head to head)
221262569 1262608 + GC04P001262



231282936 1283492 - GC04M001285



241291858 1293757 + GC04P001291



251283639 1333935 + MAEA
Exon structure
Hs.139896 10296 ENSG00000090316 macrophage erythroblast attacher
261321860 1321886 + PIR40977
Exon structure




271336582 1340665 - GC04M001336



281348295 1349002 + GC04P001348



291350369 1351863 + ENSG00000254094
Exon structure


ENSG00000254094
301352267 1353249 + ENSG00000253399
Exon structure


ENSG00000253399
311341054 1381837 + UVSSA
Exon structure
Hs.380475 57654 ENSG00000163945 UV-stimulated scaffold protein A
321365911 1366742 - GC04M001365



331378600 1379697 + GC04P001380



341379874 1379900 + PIR51593
Exon structure




351384099 1385606 - GC04M001384



361386737 1386766 + PIR51310
Exon structure




371385340 1389782 + CRIPAK
Exon structure
Hs.26410 285464 ENSG00000179979 cysteine-rich PAK1 inhibitor
381387829 1387855 + PIR54366
Exon structure




391388342 1388368 + PIR54652
Exon structure




401387487 1389774 - GC04M001389



411397040 1397157 - GC04M001406



421397040 1397157 - GC04M001407



431396720 1400119 - NKX1-1
Exon structure
Hs.526396 54729 ENSG00000235608 NK1 homeobox 1
441403257 1403407 + GC04P001407



451502865 1504482 - GC04M001502



461546985 1555291 + GC04P001549



471552011 1552299 + ENSG00000272783
Exon structure


ENSG00000272783
481553726 1554076 - GC04M001556



491561568 1563751 + GC04P001561



501573436 1582249 - GC04M001573



511575789 1581980 - LOC100507054
Exon structure
Hs.192784 100507054 ENSG00000244459 Uncharacterized LOC100507054 (est)
521583531 1583564 + GC04P001583



531643289 1646680 - GC04M001643



541619642 1686029 - FAM53A
Exon structure
Hs.143314 152877 ENSG00000174137 family with sequence similarity 53, member A
551685147 1685256 - ENSG00000207009
Exon structure


ENSG00000207009
561685420 1685449 - PIR55509
Exon structure




571692774 1694119 + GC04P001692



581694527 1714282 - SLBP
Exon structure
Hs.298345 7884 ENSG00000163950 stem-loop binding protein
591704710 1704740 + GC04P001705



601706863 1706897 + GC04P001706



611714548 1715349 + ENSG00000270195
Exon structure


ENSG00000270195
621717679 1723085 - TMEM129
Exon structure
Hs.518562 92305 ENSG00000168936 transmembrane protein 129
631721948 1721974 - PIR44595
Exon structure




641723227 1746898 + TACC3
Exon structure
Hs.104019 10460 ENSG00000013810 transforming, acidic coiled-coil containing protein 3
651732530 1739372 + GC04P001732



661740307 1742710 - GC04M001740



671741078 1743830 + ENSG00000218422
Exon structure


ENSG00000218422
681746166 1746803 + GC04P001746



691795034 1810599 + FGFR3
Exon structure
Hs.1420 2261 ENSG00000068078 fibroblast growth factor receptor 3
701803188 1805466 + GC04P001823



711803188 1805466 + GC04P001825



721803188 1805466 + GC04P001824



731804640 1804791 + GC04P001821



741807784 1808282 + GC04P001826



751821099 1824369 - GC04M001821



761824819 1824849 - GC04M001824



771829228 1829258 - GC04M001829



781829270 1829313 - GC04M001830



791833764 1833794 + GC04P001833



801813206 1857974 - LETM1
Exon structure
Hs.120165 3954 ENSG00000168924 leucine zipper-EF-hand containing transmembrane protein 1
811844893 1844920 - PIR36092
Exon structure




821848201 1857698 - GC04M001848



831869269 1869302 + GC04P001869



841870787 1871064 - RN7SL671P
Exon structure

hugo1470 ENSG00000240455 RNA, 7SL, cytoplasmic 671, pseudogene
851892534 1892566 + GC04P001892



861873123 1983934 + WHSC1
Exon structure
Hs.113876 7468 ENSG00000109685 Wolf-Hirschhorn syndrome candidate 1
871942604 1942631 + PIR46454
Exon structure




881932457 1957885 + GC04P001932



891945358 1945386 + PIR44856
Exon structure




901961768 1962113 - GC04M001969



911961768 1962113 - ENSG00000183504
Exon structure


ENSG00000183504
921963647 1963675 - PIR46677
Exon structure




931976362 1976487 + GC04P001983



941976362 1976487 + GC04P001980



951976363 1976487 + SCARNA22
Exon structure
Hs.676951 677770 ENSG00000249784 small Cajal body-specific RNA 22
961978080 1980629 + GC04P001982



971988111 1988204 - MIR943
Exon structure

100126332 ENSG00000216105 microRNA 943
981989228 1991483 - GC04M001989



991984441 2043630 - NELFA
Exon structure
Hs.21771 7469 ENSG00000185049 negative elongation factor complex member A
1002011391 2043486 - GC04M002014



1012038238 2038264 - PIR61705
Exon structure




1022043689 2045697 + C4orf48
Exon structure
Hs.446474 401115 ENSG00000243449 chromosome 4 open reading frame 48
1032044509 2045611 + GC04P002050



1042044509 2045611 + GC04P002051



1052055692 2060291 - GC04M002055



1062061239 2070816 + NAT8L
Exon structure
Hs.318529 339983 ENSG00000185818 N-acetyltransferase 8-like (GCN5-related, putative)
1072067632 2067659 + PIR47482
Exon structure




1082068844 2068879 + PIR58665
Exon structure




1092073649 2078785 - GC04M002074



1102080212 2082768 - GC04M002080



1112082837 2084737 - GC04M002082



1122090242 2092431 - LOC100419959
Exon structure

100419959

1132090445 2092344 - ENSG00000249006
Exon structure


ENSG00000249006
1142122434 2122465 + GC04P002122



1152141400 2142785 + ENSG00000250623
Exon structure


ENSG00000250623
1162073645 2243848 - POLN
Exon structure
Hs.368454 353497 ENSG00000130997 polymerase (DNA directed) nu
1172158224 2160938 - GC04M002158



1182231939 2231974 + GC04P002231



1192235978 2236226 + GC04P002236



1202229191 2243891 - HAUS3
Exon structure
Hs.665869 79441 ENSG00000214367 HAUS augmin-like complex, subunit 3
1212235978 2243636 + COX6B1P5
Exon structure

100289662 ENSG00000249047 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 5
1222248299 2248327 - PIR41429
Exon structure




1232250548 2250575 - PIR62291
Exon structure




1242251804 2251883 - MIR4800
Exon structure

100616358 ENSG00000265080 microRNA 4800
1252254249 2254279 - GC04M002256



1262254249 2254279 - PIR58500
Exon structure




1272249159 2264021 - MXD4
Exon structure
Hs.655020 10608 ENSG00000123933 MAX dimerization protein 4
1282272645 2273478 - GC04M002272



1292297311 2320816 + ENSG00000251148
Exon structure


ENSG00000251148
1302317926 2318233 - RN7SL589P
Exon structure

hugo1380 ENSG00000239247 RNA, 7SL, cytoplasmic 589, pseudogene
1312326194 2326813 + LOC100421664
Exon structure

100421664 ENSG00000249077
1322344308 2345251 - GC04M002344



1332271309 2420390 - ZFYVE28
Exon structure
Hs.292056 57732 ENSG00000159733 zinc finger, FYVE domain containing 28
1342387431 2387457 - PIR52561
Exon structure




1352395586 2395613 + PIR44270
Exon structure




1362420701 2430972 + GC04P002426



1372441778 2441817 + GC04P002441



1382420701 2464690 + RP11-503N18.1
Exon structure
Hs.443116 402160 ENSG00000206113 Uncharacterized LOC402160 (est)
1392444924 2452083 + GC04P002444



1402451700 2464668 + ENSG00000249428
Exon structure


ENSG00000249428
1412465524 2465851 + ENSG00000248399
Exon structure


ENSG00000248399
1422470831 2514858 + GC04P002470



1432506808 2508006 - ENSG00000251229
Exon structure


ENSG00000251229
1442463947 2627047 + RNF4
Exon structure
Hs.66394 6047 ENSG00000063978 ring finger protein 4
1452561696 2599219 + GC04P002564



1462609597 2609873 - ENSG00000248155
Exon structure


ENSG00000248155
1472616851 2616951 - ENSG00000206738
Exon structure


ENSG00000206738
1482620671 2620702 + GC04P002620



1492637474 2637507 + GC04P002637



1502649906 2650734 + GC04P002649



1512626988 2734302 + FAM193A
Exon structure
Hs.652364 8603 ENSG00000125386 family with sequence similarity 193, member A
1522743802 2746590 - GC04M002743



1532743375 2758103 - TNIP2
Exon structure
Hs.368551 79155 ENSG00000168884 TNFAIP3 interacting protein 2
1542764665 2764697 + GC04P002764



1552763548 2771553 + GC04P002763



1562786205 2786232 - PIR37134
Exon structure




1572795451 2798373 + GC04P002795



1582817980 2818010 + GC04P002817



1592816561 2819952 + GC04P002816



1602794750 2842825 + SH3BP2
Exon structure
Hs.167679 6452 ENSG00000087266 SH3-domain binding protein 2
1612822396 2826509 + GC04P002822



1622828577 2834775 + GC04P002828



1632837562 2837595 + GC04P002837



1642837616 2839958 - GC04M002837



1652845619 2845749 + GC04P002856



1662845619 2845749 + GC04P002854



1672845619 2845749 + GC04P002855



1682853772 2853805 + GC04P002853



1692845680 2878132 + GC04P002857



1702883015 2883049 + GC04P002883



1712845584 2931803 + ADD1
Exon structure
Hs.183706 118 ENSG00000087274 adducin 1 (alpha)
1722889231 2904641 + GC04P002889



1732906567 2906597 + PIR46708
Exon structure




1742906567 2906597 + GC04P002910



1752906391 2931803 + GC04P002912



1762932867 2933663 - GC04M002932



1772932288 2936586 - MFSD10
Exon structure
Hs.632581 10227 ENSG00000109736 major facilitator superfamily domain containing 10
1782944042 2944070 + PIR36148
Exon structure




1792944042 2944070 + GC04P002948



1802937277 2952794 + GC04P002947



1812936626 2963465 + NOP14-AS1
Exon structure
Hs.398178; Hs.731500 317648 ENSG00000249673 NOP14 antisense RNA 1
1822939660 2965118 - NOP14
Exon structure
Hs.627133 8602 ENSG00000087269 NOP14 nucleolar protein
1832970896 2972919 + GC04P002973



1842965803 2990554 + GC04P002972



1852965805 2990554 + GC04P002974



1862984636 2984653 + GC04P002984



1873003303 3003337 + GC04P003003



1882965335 3042474 + GRK4
Exon structure
Hs.32959 2868 ENSG00000125388 G protein-coupled receptor kinase 4
1893005658 3005689 + GC04P003005



1903045827 3045934 + GC04P003050



1913045828 3045934 + ENSG00000199335
Exon structure


ENSG00000199335
1923047154 3047593 + GC04P003051



1933051281 3064341 - GC04M003054



1943060661 3061446 + GC04P003060



1953061974 3062266 - GC04M003061



1963062430 3062871 - GC04M003062



1973064480 3064508 - PIR39370
Exon structure




1983065198 3065428 + GC04P003067



1993066288 3066560 - GC04M003068



2003065198 3076241 - HTT-AS
Exon structure

100750326 ENSG00000251075 HTT antisense RNA (head to head)
2013074146 3074178 - GC04M003076



2023074146 3074178 - PIR60190
Exon structure




2033076182 3076242 + GC04P003080



2043080208 3080258 - GC04M003083



2053095857 3095887 - GC04M003095



2063096773 3096804 - GC04M003096



2073111161 3111194 + GC04P003111



2083123127 3125193 + GC04P003123



2093076408 3245687 + HTT
Exon structure
Hs.518450 3064 ENSG00000197386 huntingtin
2103193108 3193142 + GC04P003193



2113204733 3208306 + GC04P003204



2123230372 3231649 + GC04P003230



2133237151 3237906 + GC04P003237



2143250212 3251349 - GC04M003250



2153250986 3257766 + GC04P003257



2163246096 3273465 + MSANTD1
Exon structure
Hs.442291 345222 ENSG00000188981 Myb/SANT-like DNA-binding domain containing 1
2173250766 3273465 + GC04P003256



2183299278 3299308 + PIR53147
Exon structure




2193299278 3299308 + GC04P003301



2203311226 3312170 + GC04P003337



2213314239 3314785 + LOC100286945
Exon structure

100286945 ENSG00000248840
2223314543 3314789 + GC04P003331



2233319460 3319486 + PIR35246
Exon structure




2243322342 3322373 + GC04P003334



2253322342 3322373 + PIR59900
Exon structure




2263325653 3326509 - RPL7AP29
Exon structure

100271043 ENSG00000248843 ribosomal protein L7a pseudogene 29
2273325704 3326489 - GC04M003326



2283317794 3344916 + GC04P003332



2293317794 3380409 + GC04P003333



2303319766 3380318 + GC04P003336



2313311451 3419177 + GC04P003335



2323294755 3441640 + RGS12
Exon structure
Hs.527061 6002 ENSG00000159788 regulator of G-protein signaling 12
2333386093 3386124 + GC04P003386



2343387331 3416571 + GC04P003387



2353422115 3424251 + GC04P003422



2363429818 3429847 + PIR36896
Exon structure




2373432933 3432959 + PIR44828
Exon structure




2383429816 3441640 + GC04P003430



2393443614 3451213 + HGFAC
Exon structure
Hs.104 3083 ENSG00000109758 HGF activator
2403465033 3503200 + DOK7
Exon structure
Hs.122110 285489 ENSG00000175920 docking protein 7
2413505324 3506184 - ENSG00000261643
Exon structure


ENSG00000261643
2423508422 3512749 - GC04M003536



2433510861 3511626 - GC04M003533



2443510861 3511626 - GC04M003528



2453511523 3511678 - ENSG00000268781
Exon structure


ENSG00000268781
2463512625 3512655 - PIR51085
Exon structure




2473512625 3512655 - GC04M003530



2483512889 3512918 - PIR35299
Exon structure




2493514295 3520638 - GC04M003534



2503514297 3520638 - GC04M003535



2513505324 3534286 - LRPAP1
Exon structure
Hs.40966 4043 ENSG00000163956 low density lipoprotein receptor-related protein associated protein 1
2523530967 3531002 + GC04P003530



2533539788 3539818 - GC04M003539



2543540997 3541025 - GC04M003540



2553541367 3541399 + GC04P003541



2563546282 3550523 + ENSG00000270090
Exon structure


ENSG00000270090
2573578596 3592712 + LINC00955
Exon structure
Hs.145563 285492 ENSG00000216560 long intergenic non-protein coding RNA 955
2583600324 3601755 - GC04M003600



2593634756 3635702 + ENSG00000250681
Exon structure


ENSG00000250681
2603641197 3643784 + GC04P003644



2613650108 3650922 + GC04P003653



2623675320 3679582 - RP3-513G18.2
Exon structure
Hs.554274 100133461 ENSG00000250632 Uncharacterized LOC100133461 (est)
2633762134 3762165 - PIR54762
Exon structure




2643762134 3762165 - GC04M003763



2653760475 3765117 - ENSG00000250986
Exon structure


ENSG00000250986
2663768075 3770253 + ADRA2C
Exon structure
Hs.123022 152 ENSG00000184160 adrenoceptor alpha 2C
2673891083 3891976 - GC04M003893



2683891030 3892054 - OR7E163P
Exon structure

100131415 ENSG00000251166 olfactory receptor, family 7, subfamily E, member 163, pseudogene
2693903233 3904267 - OR7E162P
Exon structure

442101 ENSG00000234386 olfactory receptor, family 7, subfamily E, member 162 pseudogene
2703912010 3912331 + ENSG00000249522
Exon structure


ENSG00000249522
2713916914 3926001 - ENSG00000271977
Exon structure


ENSG00000271977
2723923358 3926001 - LOC100420818
Exon structure

100420818

2733916910 3957148 - ENSG00000253917
Exon structure


ENSG00000253917
2743937172 3946775 + ALG1L7P
Exon structure

728263 ENSG00000251271 asparagine-linked glycosylation 1-like 7, pseudogene
2753940250 3944248 + GC04P003940



2763943487 3957148 - FAM86EP
Exon structure
Hs.591720 348926 ENSG00000251669 family with sequence similarity 86, member E, pseudogene
2773963723 3963754 + GC04P003963



2783966238 3966280 + GC04P003967



2793968760 3969387 - ENPP7P9
Exon structure

100421803 ENSG00000250476 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 9
2804007031 4007061 + GC04P004007



2814037362 4038966 - GC04M004040



2824038811 4038914 + ENSG00000264106
Exon structure


ENSG00000264106
2834044280 4044308 + GC04P004044



2844034897 4076780 + GC04P004035



2854062053 4062071 + GC04P004062



2864078394 4079242 - RPS3AP16
Exon structure

727951 ENSG00000243894 ribosomal protein S3a pseudogene 16
2874051761 4109306 - GC04M004056



2884086061 4086208 + ENSG00000221301
Exon structure


ENSG00000221301
2894088365 4088541 + ENSG00000250940
Exon structure


ENSG00000250940
2904106475 4109606 - LOC100130459
Exon structure

100130459

2914110018 4110044 + PIR31961
Exon structure




2924119652 4120011 - ENSG00000248669
Exon structure


ENSG00000248669
2934128386 4129296 - GC04M004135



2944128333 4129357 - OR4D12P
Exon structure

282754 ENSG00000198787 olfactory receptor, family 4, subfamily D, member 12 pseudogene
2954145185 4152148 - UNC93B4
Exon structure

643384 ENSG00000250381 unc-93 homolog B4 pseudogene (C. elegans)
2964158249 4159170 - GC04M004162



2974158206 4159230 - OR7E99P
Exon structure

81419 ENSG00000250710 olfactory receptor, family 7, subfamily E, member 99 pseudogene
2984176048 4177017 - OR7E43P
Exon structure

26475 ENSG00000249844 olfactory receptor, family 7, subfamily E, member 43 pseudogene
2994191012 4191040 + PIR49722
Exon structure




3004190530 4228621 - OTOP1
Exon structure
Hs.534544 133060 ENSG00000163982 otopetrin 1
3014237269 4249950 - TMEM128
Exon structure
Hs.12845 85013 ENSG00000132406 transmembrane protein 128
3024269428 4270659 - GC04M004270



3034269428 4291896 - LYAR
Exon structure
Hs.425427 55646 ENSG00000145220 Ly1 antibody reactive
3044291924 4323513 + ZBTB49
Exon structure
Hs.419997 166793 ENSG00000168826 zinc finger and BTB domain containing 49
3054323689 4335909 + ENSG00000248516
Exon structure


ENSG00000248516
3064335384 4335410 + PIR59167
Exon structure




3074342985 4343016 + GC04P004342



3084382709 4386984 + GC04P004382



3094349867 4420785 + NSG1
Exon structure
Hs.518595 27065 ENSG00000168824 Neuron specific gene family member 1 (est)
3104420695 4428340 - GC04M004420



3114477848 4483427 - STX18-IT1
Exon structure

hugo3553 ENSG00000248221 STX18 intronic transcript 1 (non-protein coding)
3124417469 4544073 - STX18
Exon structure
Hs.584913 53407 ENSG00000168818 syntaxin 18
3134508805 4509510 + RPS7P15
Exon structure

728015 ENSG00000237170 ribosomal protein S7 pseudogene 15
3144552632 4552660 + PIR46757
Exon structure




3154546465 4577798 - GC04M004549



3164567590 4568597 + GC04P004568



3174608917 4608945 + PIR33592
Exon structure




3184543858 4712665 + STX18-AS1
Exon structure
Hs.276795 100507266 ENSG00000247708 STX18 antisense RNA 1 (head to head)
3194645584 4645615 + PIR32620
Exon structure




3204711947 4716200 - GC04M004714



3214763532 4789101 + GC04P004766



3224788010 4788037 + PIR47095
Exon structure




3234822132 4823179 + GC04P004825



3244846164 4852554 + ENSG00000273396
Exon structure


ENSG00000273396
3254861392 4865663 + MSX1
Exon structure
Hs.424414 4487 ENSG00000163132 msh homeobox 1
3264895351 4896995 - LDHAP1
Exon structure

3940 ENSG00000251587 lactate dehydrogenase A pseudogene 1
3274922497 4922791 - RN7SKP113
Exon structure

hugo572 ENSG00000200761 RNA, 7SK small nuclear pseudogene 113
3284923787 4924981 - GC04M004929



3294928033 4928062 - GC04M004928



3304922513 4990398 + GC04P004926



3314962406 4965120 + GC04P004962



3325016313 5021199 - CYTL1
Exon structure
Hs.13872 54360 ENSG00000170891 cytokine-like 1
3335034987 5035431 + GC04P005035



3345050565 5053186 - GC04M005050



3355194797 5205613 - GC04M005194



3365053169 5502725 + STK32B
Exon structure
Hs.133062 55351 ENSG00000152953 serine/threonine kinase 32B