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  Chromosome 4

   GeneLoc map region (1,076,408 - 5,245,687 bp) around gene/marker "HTT"

   Explanation:
   HTT is located at 3,076,408-3,245,687 bp

    [ GeneLoc Home Page ]


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#
Start
(bp)
End
(bp)
Strand
Gene
Unigene cluster
Entrez Gene Id
Ensembl Id
Description
11050038 1107352 - RNF212
Exon structure
Hs.248290 285498 ENSG00000178222 ring finger protein 212
21093804 1095346 - ENSG00000251639
Exon structure


ENSG00000251639
31093832 1095490 - LOC100421802
Exon structure

100421802

41112671 1112801 + GC04P001119



51112672 1112801 + ENSG00000212458
Exon structure


ENSG00000212458
61107427 1126765 + ENSG00000251652
Exon structure


ENSG00000251652
71108985 1147514 - TMED11P
Exon structure
Hs.635208 100379220 ENSG00000215367 transmembrane emp24 protein transport domain containing 11, pseudogene
81135159 1137489 + GC04P001139



91145160 1147489 + FLJ35816
Exon structure
Hs.531391 401114 ENSG00000227189 FLJ35816 protein (est)
101151560 1151587 + PIR56304
Exon structure




111173235 1185110 - GC04M001176



121160720 1202750 - SPON2
Exon structure
Hs.635350 10417 ENSG00000159674 spondin 2, extracellular matrix protein
131189570 1202750 - GC04M001193



141189571 1202750 - LOC100130872
Exon structure
Hs.302963 100130872
Uncharacterized LOC100130872 (est)
151203908 1212379 + CTBP1-AS
Exon structure
Hs.707614 285463
CTBP1 antisense RNA
161205228 1243741 - CTBP1
Exon structure
Hs.208597 1487 ENSG00000159692 C-terminal binding protein 1
171245043 1245070 + PIR37123
Exon structure




181243898 1246795 + GC04P001248



191243088 1282079 + CTBP1-AS2
Exon structure
Hs.561314 92070 ENSG00000196810 CTBP1 antisense RNA 2 (head to head)
201282935 1283492 - GC04M001284



211283639 1333935 + MAEA
Exon structure
Hs.139896 10296 ENSG00000090316 macrophage erythroblast attacher
221321860 1321886 + PIR40977
Exon structure




231350369 1351863 + ENSG00000254094
Exon structure


ENSG00000254094
241352267 1353249 + ENSG00000253399
Exon structure


ENSG00000253399
251341054 1381837 + UVSSA
Exon structure
Hs.380475 57654 ENSG00000163945 UV-stimulated scaffold protein A
261369821 1381837 + GC04P001371



271379874 1379900 + PIR51593
Exon structure




281386737 1386766 + PIR51310
Exon structure




291385340 1389782 + CRIPAK
Exon structure
Hs.26410 285464 ENSG00000179979 cysteine-rich PAK1 inhibitor
301387829 1387855 + PIR54366
Exon structure




311388342 1388368 + PIR54652
Exon structure




321397040 1397157 - GC04M001405



331397040 1397157 - GC04M001404



341396720 1400119 - NKX1-1
Exon structure
Hs.526396 54729 ENSG00000235608 NK1 homeobox 1
351403257 1403407 + GC04P001405



361546984 1555291 + GC04P001548



371553869 1554076 - GC04M001555



381575789 1581980 - LOC100507054
Exon structure
Hs.192784 100507054 ENSG00000244459 Uncharacterized LOC100507054 (est)
391619642 1686029 - FAM53A
Exon structure
Hs.143314 152877 ENSG00000174137 family with sequence similarity 53, member A
401685147 1685256 - ENSG00000207009
Exon structure


ENSG00000207009
411685148 1685256 - GC04M001692



421685420 1685449 - PIR55509
Exon structure




431694527 1714282 - SLBP
Exon structure
Hs.298345 7884 ENSG00000163950 stem-loop binding protein
441714548 1715349 + ENSG00000270195
Exon structure


ENSG00000270195
451717679 1723085 - TMEM129
Exon structure
Hs.518562 92305 ENSG00000168936 transmembrane protein 129
461721948 1721974 - PIR44595
Exon structure




471723227 1746898 + TACC3
Exon structure
Hs.104019 10460 ENSG00000013810 transforming, acidic coiled-coil containing protein 3
481741078 1743830 + ENSG00000218422
Exon structure


ENSG00000218422
491795034 1810599 + FGFR3
Exon structure
Hs.1420 2261 ENSG00000068078 fibroblast growth factor receptor 3
501803188 1805466 + GC04P001818



511803188 1805466 + GC04P001819



521803188 1805466 + GC04P001817



531804640 1804791 + GC04P001816



541807784 1808282 + GC04P001820



551813206 1857974 - LETM1
Exon structure
Hs.120165 3954 ENSG00000168924 leucine zipper-EF-hand containing transmembrane protein 1
561844893 1844920 - PIR36092
Exon structure




571870787 1871064 - RN7SL671P
Exon structure

hugo1362 ENSG00000240455 RNA, 7SL, cytoplasmic 671, pseudogene
581873123 1983934 + WHSC1
Exon structure
Hs.113876 7468 ENSG00000109685 Wolf-Hirschhorn syndrome candidate 1
591942604 1942631 + PIR46454
Exon structure




601945358 1945386 + PIR44856
Exon structure




611961768 1962113 - GC04M001968



621961768 1962113 - ENSG00000183504
Exon structure


ENSG00000183504
631963647 1963675 - PIR46677
Exon structure




641976362 1976487 + GC04P001979



651976363 1976487 + SCARNA22
Exon structure
Hs.676951 677770 ENSG00000249784 small Cajal body-specific RNA 22
661988111 1988204 - MIR943
Exon structure

100126332 ENSG00000216105 microRNA 943
671984441 2043630 - NELFA
Exon structure
Hs.21771 7469 ENSG00000185049 negative elongation factor complex member A
682011390 2025400 - GC04M002013



692038238 2038264 - PIR61705
Exon structure




702037933 2043486 - GC04M002041



712043689 2045697 + C4orf48
Exon structure
Hs.446474 401115 ENSG00000243449 chromosome 4 open reading frame 48
722044509 2045611 + GC04P002048



732044509 2045611 + GC04P002049



742061239 2070816 + NAT8L
Exon structure
Hs.318529 339983 ENSG00000185818 N-acetyltransferase 8-like (GCN5-related, putative)
752067632 2067659 + PIR47482
Exon structure




762068844 2068879 + PIR58665
Exon structure




772090242 2092431 - LOC100419959
Exon structure

100419959

782090445 2092344 - ENSG00000249006
Exon structure


ENSG00000249006
792141400 2142785 + ENSG00000250623
Exon structure


ENSG00000250623
802073645 2243848 - POLN
Exon structure
Hs.368454 353497 ENSG00000130997 polymerase (DNA directed) nu
812229191 2243891 - HAUS3
Exon structure
Hs.665869 79441 ENSG00000214367 HAUS augmin-like complex, subunit 3
822235978 2243636 + COX6B1P5
Exon structure

100289662 ENSG00000249047 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 5
832248299 2248327 - PIR41429
Exon structure




842250548 2250575 - PIR62291
Exon structure




852251804 2251883 - MIR4800
Exon structure

100616358 ENSG00000265080 microRNA 4800
862254249 2254279 - PIR58500
Exon structure




872249159 2264021 - MXD4
Exon structure
Hs.655020 10608 ENSG00000123933 MAX dimerization protein 4
882297311 2320816 + ENSG00000251148
Exon structure


ENSG00000251148
892317926 2318233 - RN7SL589P
Exon structure

hugo1272 ENSG00000239247 RNA, 7SL, cytoplasmic 589, pseudogene
902326194 2326813 + LOC100421664
Exon structure

100421664 ENSG00000249077
912271309 2420390 - ZFYVE28
Exon structure
Hs.292056 57732 ENSG00000159733 zinc finger, FYVE domain containing 28
922387431 2387457 - PIR52561
Exon structure




932395586 2395613 + PIR44270
Exon structure




942420701 2452087 + ENSG00000206113
Exon structure


ENSG00000206113
952420701 2464690 + LOC402160
Exon structure
Hs.443116 402160
Uncharacterized LOC402160 (est)
962451700 2464668 + ENSG00000249428
Exon structure


ENSG00000249428
972465524 2465851 + ENSG00000248399
Exon structure


ENSG00000248399
982506808 2508006 - ENSG00000251229
Exon structure


ENSG00000251229
992463947 2627047 + RNF4
Exon structure
Hs.66394 6047 ENSG00000063978 ring finger protein 4
1002561695 2599219 + GC04P002563



1012609597 2609873 - ENSG00000248155
Exon structure


ENSG00000248155
1022616851 2616951 - ENSG00000206738
Exon structure


ENSG00000206738
1032616852 2616951 - GC04M002618



1042626988 2734302 + FAM193A
Exon structure
Hs.652364 8603 ENSG00000125386 family with sequence similarity 193, member A
1052743375 2758103 - TNIP2
Exon structure
Hs.368551 79155 ENSG00000168884 TNFAIP3 interacting protein 2
1062765472 2771553 + GC04P002767



1072786205 2786232 - PIR37134
Exon structure




1082794750 2842825 + SH3BP2
Exon structure
Hs.167679 6452 ENSG00000087266 SH3-domain binding protein 2
1092845619 2845749 + GC04P002852



1102845584 2931803 + ADD1
Exon structure
Hs.183706 118 ENSG00000087274 adducin 1 (alpha)
1112906567 2906597 + PIR46708
Exon structure




1122932288 2936586 - MFSD10
Exon structure
Hs.632581 10227 ENSG00000109736 major facilitator superfamily domain containing 10
1132944042 2944070 + GC04P002946



1142944042 2944070 + PIR36148
Exon structure




1152937277 2952794 + GC04P002942



1162936625 2963465 + GC04P002943



1172936626 2963465 + NOP14-AS1
Exon structure
Hs.398178; Hs.731500 317648 ENSG00000249673 NOP14 antisense RNA 1
1182939660 2965118 - NOP14
Exon structure
Hs.627133 8602 ENSG00000087269 NOP14 nucleolar protein
1192965804 2990554 + GC04P002971



1202965803 2990554 + GC04P002970



1212965335 3042474 + GRK4
Exon structure
Hs.32959 2868 ENSG00000125388 G protein-coupled receptor kinase 4
1223045827 3045934 + GC04P003049



1233045828 3045934 + RNU6-204P
Exon structure

hugo2404 ENSG00000199335 RNA, U6 small nuclear 204, pseudogene
1243051280 3064341 - GC04M003053



1253064480 3064508 - PIR39370
Exon structure




1263065198 3065428 + GC04P003066



1273065198 3076241 - HTT-AS
Exon structure

100750326 ENSG00000251075 HTT antisense RNA (head to head)
1283074146 3074178 - PIR60190
Exon structure




1293076182 3076242 + GC04P003078



1303080208 3080258 - GC04M003082



1313076408 3245687 + HTT
Exon structure
Hs.518450 3064 ENSG00000197386 huntingtin
1323250986 3257766 + GC04P003255



1333246096 3273465 + MSANTD1
Exon structure
Hs.442291 345222 ENSG00000188981 Myb/SANT-like DNA-binding domain containing 1
1343250766 3273465 + GC04P003254



1353299278 3299308 + PIR53147
Exon structure




1363314239 3314581 + LOC100286945
Exon structure

100286945

1373314239 3314785 + ENSG00000248840
Exon structure


ENSG00000248840
1383314543 3314789 + GC04P003327



1393319460 3319486 + PIR35246
Exon structure




1403322342 3322373 + PIR59900
Exon structure




1413322342 3322373 + GC04P003330



1423325653 3326509 - RPL7AP29
Exon structure

100271043 ENSG00000248843 ribosomal protein L7a pseudogene 29
1433317794 3344916 + GC04P003328



1443317794 3380409 + GC04P003329



1453311451 3419177 + GC04P003313



1463294755 3441640 + RGS12
Exon structure
Hs.527061 6002 ENSG00000159788 regulator of G-protein signaling 12
1473429818 3429847 + PIR36896
Exon structure




1483432933 3432959 + PIR44828
Exon structure




1493443614 3451213 + HGFAC
Exon structure
Hs.104 3083 ENSG00000109758 HGF activator
1503465033 3503200 + DOK7
Exon structure
Hs.701584; Hs.122110 285489 ENSG00000175920 docking protein 7
1513505341 3506074 - GC04M003507



1523505324 3506184 - ENSG00000261643
Exon structure


ENSG00000261643
1533511523 3511678 - ENSG00000268781
Exon structure


ENSG00000268781
1543512625 3512655 - PIR51085
Exon structure




1553512889 3512918 - PIR35299
Exon structure




1563514296 3520638 - GC04M003527



1573514295 3520638 - GC04M003526



1583505324 3534286 - LRPAP1
Exon structure
Hs.40966 4043 ENSG00000163956 low density lipoprotein receptor-related protein associated protein 1
1593546282 3550523 + ENSG00000270090
Exon structure


ENSG00000270090
1603578596 3592712 + LINC00955
Exon structure
Hs.145563 285492 ENSG00000216560 long intergenic non-protein coding RNA 955
1613634756 3635702 + ENSG00000250681
Exon structure


ENSG00000250681
1623641196 3643784 + GC04P003643



1633650107 3650922 + GC04P003652



1643675320 3679582 - LOC100133461
Exon structure
Hs.554274 100133461 ENSG00000250632 Uncharacterized LOC100133461 (est)
1653762134 3762165 - PIR54762
Exon structure




1663760475 3765117 - ENSG00000250986
Exon structure


ENSG00000250986
1673768075 3770253 + ADRA2C
Exon structure
Hs.123022 152 ENSG00000184160 adrenoceptor alpha 2C
1683891030 3892054 - OR7E163P
Exon structure

100131415 ENSG00000251166 olfactory receptor, family 7, subfamily E, member 163, pseudogene
1693903233 3904267 - OR7E162P
Exon structure

442101 ENSG00000234386 olfactory receptor, family 7, subfamily E, member 162 pseudogene
1703912010 3912331 + ENSG00000249522
Exon structure


ENSG00000249522
1713916914 3926001 - ENSG00000271977
Exon structure


ENSG00000271977
1723923358 3926001 - LOC100420818
Exon structure

100420818

1733916910 3957148 - ENSG00000253917
Exon structure


ENSG00000253917
1743937172 3946775 + ALG1L7P
Exon structure

728263 ENSG00000251271 asparagine-linked glycosylation 1-like 7, pseudogene
1753943487 3957148 - FAM86EP
Exon structure
Hs.591720 348926 ENSG00000251669 family with sequence similarity 86, member E, pseudogene
1763968760 3969387 - ENPP7P9
Exon structure

100421803 ENSG00000250476 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 9
1774037361 4038966 - GC04M004039



1784038811 4038914 + ENSG00000264106
Exon structure


ENSG00000264106
1794038037 4076780 + GC04P004042



1804078394 4079242 - RPS3AP16
Exon structure

727951 ENSG00000243894 ribosomal protein S3a pseudogene 16
1814051760 4109306 - GC04M004055



1824086061 4086208 + ENSG00000221301
Exon structure


ENSG00000221301
1834088365 4088541 + ENSG00000250940
Exon structure


ENSG00000250940
1844106475 4109606 - LOC100130459
Exon structure

100130459

1854110018 4110044 + PIR31961
Exon structure




1864119652 4120011 - ENSG00000248669
Exon structure


ENSG00000248669
1874128333 4129357 - OR4D12P
Exon structure

282754 ENSG00000198787 olfactory receptor, family 4, subfamily D, member 12 pseudogene
1884145185 4152148 - UNC93B4
Exon structure

643384 ENSG00000250381 unc-93 homolog B4 pseudogene (C. elegans)
1894158206 4159230 - OR7E99P
Exon structure

81419 ENSG00000250710 olfactory receptor, family 7, subfamily E, member 99 pseudogene
1904176048 4177017 - OR7E43P
Exon structure

26475 ENSG00000249844 olfactory receptor, family 7, subfamily E, member 43 pseudogene
1914191012 4191040 + PIR49722
Exon structure




1924190530 4228621 - OTOP1
Exon structure
Hs.534544 133060 ENSG00000163982 otopetrin 1
1934237269 4249950 - TMEM128
Exon structure
Hs.12845 85013 ENSG00000132406 transmembrane protein 128
1944269428 4291896 - LYAR
Exon structure
Hs.425427 55646 ENSG00000145220 Ly1 antibody reactive
1954291924 4323513 + ZBTB49
Exon structure
Hs.419997 166793 ENSG00000168826 zinc finger and BTB domain containing 49
1964323689 4335909 + ENSG00000248516
Exon structure


ENSG00000248516
1974335384 4335410 + PIR59167
Exon structure




1984349867 4420785 + NSG1
Exon structure
Hs.518595 27065 ENSG00000168824 Neuron specific gene family member 1 (est)
1994477848 4483427 - STX18-IT1
Exon structure

hugo3433 ENSG00000248221 STX18 intronic transcript 1 (non-protein coding)
2004417469 4544073 - STX18
Exon structure
Hs.584913 53407 ENSG00000168818 syntaxin 18
2014508805 4509510 + RPS7P15
Exon structure

728015 ENSG00000237170 ribosomal protein S7 pseudogene 15
2024552632 4552660 + PIR46757
Exon structure




2034546464 4577798 - GC04M004548



2044608917 4608945 + PIR33592
Exon structure




2054543857 4712665 + GC04P004547



2064543858 4712665 + STX18-AS1
Exon structure
Hs.276795 100507266 ENSG00000247708 STX18 antisense RNA 1 (head to head)
2074645584 4645615 + PIR32620
Exon structure




2084711946 4716200 - GC04M004713



2094763531 4789101 + GC04P004765



2104788010 4788037 + PIR47095
Exon structure




2114822131 4823179 + GC04P004824



2124861392 4865663 + MSX1
Exon structure
Hs.424414 4487 ENSG00000163132 msh homeobox 1
2134895351 4896995 - LDHAP1
Exon structure

3940 ENSG00000251587 lactate dehydrogenase A pseudogene 1
2144922497 4922791 - RN7SKP113
Exon structure

hugo464 ENSG00000200761 RNA, 7SK small nuclear pseudogene 113
2154923786 4924981 - GC04M004927



2165016313 5021199 - CYTL1
Exon structure
Hs.13872 54360 ENSG00000170891 cytokine-like 1
2174922512 5225563 + GC04P004924



2185053169 5502725 + STK32B
Exon structure
Hs.133062 55351 ENSG00000152953 serine/threonine kinase 32B