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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 3

   GeneLoc map region (36,738,293 - 40,835,501 bp) around gene/marker "SCN10A"

   Explanation:
   SCN10A is located at 38,738,293-38,835,501 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
136759584 36771286 - GC03M036759



236753913 36781352 - DCLK3
Exon structure
Hs.631907 85443 ENSG00000163673 doublecortin-like kinase 3
336808291 36825658 - HSPD1P6
Exon structure

645548 ENSG00000230067 heat shock 60kDa protein 1 (chaperonin) pseudogene 6
436921675 36922220 - ENSG00000234073
Exon structure


ENSG00000234073
536868308 36986548 - TRANK1
Exon structure
Hs.170999 9881 ENSG00000168016 tetratricopeptide repeat and ankyrin repeat containing 1
636944636 36986548 - GC03M036944



737009681 37009807 - GC03M037013



837009583 37009907 - RNU6ATAC4P
Exon structure

100151687 ENSG00000210181 RNA, U6atac small nuclear 4, pseudogene
937010135 37010605 - GC03M037015



1037014608 37015163 - ENSG00000272334
Exon structure


ENSG00000272334
1137017787 37018331 + PRADC1P1
Exon structure

645571 ENSG00000236165 protease-associated domain containing 1 pseudogene 1
1237026534 37026975 - ENSG00000271835
Exon structure


ENSG00000271835
1337027357 37028273 - ENSG00000272127
Exon structure


ENSG00000272127
1437027357 37034795 - EPM2AIP1
Exon structure
Hs.28020 9852 ENSG00000178567 EPM2A (laforin) interacting protein 1
1537035268 37042545 + GC03P037035



1637057889 37058525 - RPL29P11
Exon structure

100131713 ENSG00000224858 ribosomal protein L29 pseudogene 11
1737058011 37058505 - GC03M037059



1837067128 37067188 + GC03P037072



1937067128 37067188 + GC03P037073



2037034823 37107380 + MLH1
Exon structure
Hs.195364 4292 ENSG00000076242 mutL homolog 1
2137105233 37108175 - GC03M037105



2237111224 37111241 - GC03M037112



2337134624 37134725 - ENSG00000206645
Exon structure


ENSG00000206645
2437134625 37134725 - GC03M037136



2537094117 37225180 - LRRFIP2
Exon structure
Hs.740522 9209 ENSG00000093167 leucine rich repeat (in FLII) interacting protein 2
2637175842 37176655 + UBE2D3P2
Exon structure

100130139 ENSG00000225558 ubiquitin-conjugating enzyme E2D 3 pseudogene 2
2737176149 37176593 + GC03P037178



2837181817 37181921 + GC03P037185



2937181818 37181921 + ENSG00000199594
Exon structure


ENSG00000199594
3037185003 37185535 - UBE2FP1
Exon structure

100421436 ENSG00000224080 ubiquitin-conjugating enzyme E2F (putative) pseudogene 1
3137162955 37225180 - GC03M037162



3237217887 37224124 + GC03P037217



3337223598 37224225 + ENSG00000271993
Exon structure


ENSG00000271993
3437237695 37238160 + RPS16P4
Exon structure

100271068 ENSG00000231449 ribosomal protein S16 pseudogene 4
3537238232 37238335 + ENSG00000238929
Exon structure


ENSG00000238929
3637257351 37257382 - GC03M037257



3737258270 37259479 + ENSG00000271653
Exon structure


ENSG00000271653
3837283280 37285668 - ENSG00000270194
Exon structure


ENSG00000270194
3937283303 37285686 - ENSG00000176354
Exon structure


ENSG00000176354
4037297354 37297961 + GC03P037300



4137317028 37319650 + TCEA1P2
Exon structure

399511 ENSG00000230409 transcription elongation factor A (SII), 1 pseudogene 2
4237284668 37408370 + GOLGA4
Exon structure
Hs.344151 2803 ENSG00000144674 golgin A4
4337363080 37365112 + GC03P037363



4437383140 37383257 + RNA5SP129
Exon structure

100873399 ENSG00000222208 RNA, 5S ribosomal pseudogene 129
4537420195 37425133 + GC03P037423



4637427707 37432830 + GC03P037432



4737427760 37476988 + C3orf35
Exon structure
Hs.475945 339883 ENSG00000198590 chromosome 3 open reading frame 35
4837614641 37614692 - GC03M037618



4937614642 37614704 - RNU7-73P
Exon structure

100151670 ENSG00000239105 RNA, U7 small nuclear 73 pseudogene
5037493606 37865005 + ITGA9
Exon structure
Hs.113157 3680 ENSG00000144668 integrin, alpha 9
5137725367 37774490 + GC03P037725



5237762620 37762638 + GC03P037762



5337789562 37790426 + RPL21P135
Exon structure

100419391 ENSG00000235482 ribosomal protein L21 pseudogene 135
5437789601 37790391 + GC03P037792



5537831412 37831936 - NDUFAF4P3
Exon structure

100422532 ENSG00000236411 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 3
5637786923 37903271 - ITGA9-AS1
Exon structure

101928153 ENSG00000235257 ITGA9 antisense RNA 1
5737864199 37867773 + GC03P037867



5837903451 38025960 + CTDSPL
Exon structure
Hs.475963 10217 ENSG00000144677 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
5938007214 38007300 + GC03P038017



6038010811 38011047 + GC03P038016



6138010895 38010971 + MIR26A1
Exon structure

407015 ENSG00000199075 microRNA 26a-1
6238020859 38020927 + GC03P038026



6338034884 38035496 + GC03P038034



6438029550 38048679 + VILL
Exon structure
Hs.103665 50853 ENSG00000136059 villin-like
6538042398 38048675 + GC03P038042



6638048987 38049826 - GC03M038048



6738056059 38056160 + ENSG00000200579
Exon structure


ENSG00000200579
6838048987 38071253 - PLCD1
Exon structure
Hs.80776 5333 ENSG00000187091 phospholipase C, delta 1
6938061720 38066067 - GC03M038061



7038092769 38093891 + PPP2R2DP1
Exon structure

100327036 ENSG00000231668 protein phosphatase 2, regulatory subunit B, delta pseudogene 1
7138094708 38094736 + GC03P038096



7238095457 38095487 + GC03P038095



7338105715 38105745 - GC03M038105



7438104260 38127760 + GC03P038108



7538104262 38127760 + GC03P038109



7638122561 38122604 - GC03M038122



7738080696 38165516 + DLEC1
Exon structure
Hs.714499 9940 ENSG00000008226 deleted in lung and esophageal cancer 1
7838123538 38123567 - GC03M038125



7938123806 38123837 - GC03M038123



8038123847 38123876 - GC03M038126



8138129855 38137432 + GC03P038132



8238151301 38153228 + GC03P038151



8338156996 38157023 + PIR60395
Exon structure




8438144620 38178733 - ACAA1
Exon structure
Hs.643487 30 ENSG00000060971 acetyl-CoA acyltransferase 1
8538166783 38166885 - ENSG00000201965
Exon structure


ENSG00000201965
8638166784 38166885 - GC03M038193



8738164205 38178464 - GC03M038195



8838164205 38178531 - GC03M038194



8938164235 38178534 - GC03M038197



9038164205 38178576 - GC03M038196



9138164263 38178540 - GC03M038198



9238167551 38178527 - GC03M038200



9338167760 38178585 - GC03M038199



9438167822 38178583 - GC03M038201



9538170820 38175958 - GC03M038202



9638179854 38179880 - PIR37756
Exon structure




9738179969 38184513 + MYD88
Exon structure
Hs.82116 4615 ENSG00000172936 myeloid differentiation primary response 88
9838197582 38206968 - GC03M038203



9938206580 38224538 + GC03P038206



10038232295 38234884 + GC03P038239



10138232295 38234884 + GC03P038238



10238206580 38296979 + OXSR1
Exon structure
Hs.475970 9943 ENSG00000172939 oxidative stress responsive 1
10338278152 38292903 + GC03P038278



10438294723 38294753 + GC03P038296



10538294723 38294753 + PIR62277
Exon structure




10638311774 38312258 - ENSG00000237982
Exon structure


ENSG00000237982
10738307298 38319806 + SLC22A13
Exon structure
Hs.225941 9390 ENSG00000172940 solute carrier family 22 (organic anion/urate transporter), member 13
10838323785 38360066 + SLC22A14
Exon structure
Hs.165559 9389 ENSG00000144671 solute carrier family 22, member 14
10938345263 38345370 - GC03M038348



11038345264 38345370 - ENSG00000199514
Exon structure


ENSG00000199514
11138366728 38370561 - DLEC1P1
Exon structure

100421153 ENSG00000230123 deleted in lung and esophageal cancer 1 pseudogene 1
11238408299 38411772 + GC03P038408



11338388251 38462839 + XYLB
Exon structure
Hs.659985 9942 ENSG00000093217 xylulokinase homolog (H. influenzae)
11438430690 38430733 - GC03M038430



11538433171 38433197 + PIR42930
Exon structure




11638461703 38468896 + GC03P038461



11738487687 38494249 + GC03P038487



11838492518 38496311 - ACVR2B-AS1
Exon structure
Hs.570596 100128640 ENSG00000229589 ACVR2B antisense RNA 1
11938495342 38534633 + ACVR2B
Exon structure
Hs.174273 93 ENSG00000114739 activin A receptor, type IIB
12038532215 38534633 + GC03P038533



12138535554 38535801 - GC03M038535



12238537836 38539513 + GC03P038538



12338546972 38547072 - GC03M038553



12438546971 38547072 - ENSG00000207512
Exon structure


ENSG00000207512
12538556939 38557321 - DDTP1
Exon structure

101060160 ENSG00000230683 D-dopachrome tautomerase pseudogene 1
12638537618 38583652 + EXOG
Exon structure
Hs.517897 9941 ENSG00000157036 endo/exonuclease (5'-3'), endonuclease G-like
12738565867 38565896 + PIR53114
Exon structure




12838568038 38568067 + PIR53009
Exon structure




12938568290 38568319 + PIR61865
Exon structure




13038568530 38568560 + GC03P038603



13138568238 38568851 - RPL18AP7
Exon structure

100133038 ENSG00000232439 ribosomal protein L18a pseudogene 7
13238568530 38568560 + PIR36600
Exon structure




13338568664 38568694 + PIR31167
Exon structure




13438568664 38568694 + GC03P038602



13538568702 38568735 + PIR44083
Exon structure




13638569159 38569188 + PIR49321
Exon structure




13738573796 38573824 + PIR46951
Exon structure




13838574327 38574356 + PIR53720
Exon structure




13938577171 38577199 + PIR44042
Exon structure




14038579832 38579861 + PIR55116
Exon structure




14138601643 38601827 - GC03M038604



14238589548 38691164 - SCN5A
Exon structure
Hs.517898 6331 ENSG00000183873 sodium channel, voltage-gated, type V, alpha subunit
14338651250 38663933 - GC03M038660



14438651250 38663933 - GC03M038661



14538651252 38663933 - GC03M038662



14638707452 38707483 - GC03M038707



14738738293 38835501 - SCN10A
Exon structure
Hs.250443 6336 ENSG00000185313 sodium channel, voltage-gated, type X, alpha subunit
14838841787 38841885 - ENSG00000222719
Exon structure


ENSG00000222719
14938865393 38866793 + ENSG00000231243
Exon structure


ENSG00000231243
15038888727 38888779 - PIR54995
Exon structure




15138887260 38992052 - SCN11A
Exon structure
Hs.591657 11280 ENSG00000168356 sodium channel, voltage-gated, type XI, alpha subunit
15238948805 38948880 + ENSG00000215941
Exon structure


ENSG00000215941
15339011829 39011857 - PIR61629
Exon structure




15439018393 39024793 - GC03M039021



15539067478 39067584 + ENSG00000206708
Exon structure


ENSG00000206708
15639067481 39067584 + GC03P039072



15739093489 39138155 + WDR48
Exon structure
Hs.109778 57599 ENSG00000114742 WD repeat domain 48
15839129309 39133185 + GC03P039129



15939139118 39139148 - GC03M039141



16039139118 39139148 - PIR55888
Exon structure




16139139878 39140700 - GC03M039145



16239138091 39149854 - GORASP1
Exon structure
Hs.721946 64689 ENSG00000114745 golgi reassembly stacking protein 1, 65kDa
16339144331 39145216 - GC03M039144



16439141926 39149129 - GC03M039142



16539149152 39180394 + TTC21A
Exon structure
Hs.443935 199223 ENSG00000168026 tetratricopeptide repeat domain 21A
16639174466 39176351 + GC03P039174



16739177688 39178518 + GC03P039177



16839179755 39180394 + GC03P039179



16939183342 39196053 - CSRNP1
Exon structure
Hs.370950 64651 ENSG00000144655 cysteine-serine-rich nuclear protein 1
17039211426 39214275 + GC03P039211



17139220324 39220352 + PIR56273
Exon structure




17239219384 39223013 + GC03P039225



17339224701 39234087 - XIRP1
Exon structure
Hs.447868 165904 ENSG00000168334 xin actin-binding repeat containing 1
17439244498 39256163 + DSTNP4
Exon structure

729454 ENSG00000215034 destrin (actin depolymerizing factor) pseudogene 4
17539268976 39269004 + GC03P039268



17639269015 39269046 + GC03P039269



17739269052 39269084 + GC03P039270



17839269112 39269142 - GC03M039270



17939269805 39269848 + GC03P039271



18039280589 39300798 + GC03P039282



18139304985 39323226 - CX3CR1
Exon structure
Hs.78913 1524 ENSG00000168329 chemokine (C-X3-C motif) receptor 1
18239327476 39329411 + ADAD1P1
Exon structure

100422386 ENSG00000270367 adenosine deaminase domain containing 1 (testis-specific) pseudogene 1
18339371214 39373882 + GC03P039389



18439371214 39373882 + GC03P039391



18539371197 39375171 + CCR8
Exon structure
Hs.113222 1237 ENSG00000179934 chemokine (C-C motif) receptor 8
18639376470 39377430 + HNRNPA1P21
Exon structure

344697 ENSG00000228168 heterogeneous nuclear ribonucleoprotein A1 pseudogene 21
18739379620 39380370 - ENSG00000238267
Exon structure


ENSG00000238267
18839400036 39401413 + EEF1A1P24
Exon structure

645715 ENSG00000223668 eukaryotic translation elongation factor 1 alpha 1 pseudogene 24
18939400011 39401550 + GC03P039406



19039411709 39411742 + GC03P039411



19139418964 39422626 + GC03P039421



19239424815 39438842 + SLC25A38
Exon structure
Hs.369615 54977 ENSG00000144659 solute carrier family 25, member 38
19339448209 39449686 + GC03P039495



19439449879 39450030 + GC03P039483



19539449880 39450030 + SNORA6
Exon structure
Hs.745521 574040 ENSG00000206760 small nucleolar RNA, H/ACA box 6
19639449881 39450029 + GC03P039490



19739449881 39450030 + GC03P039488



19839448180 39454033 + RPSA
Exon structure
Hs.449909 3921 ENSG00000168028 ribosomal protein SA
19939452408 39452438 + GC03P039491



20039452408 39452438 + GC03P039489



20139452408 39452438 + GC03P039480



20239452408 39452438 + GC03P039476



20339452408 39452438 + PIR53261
Exon structure




20439452408 39452438 + GC03P039477



20539452426 39452457 + GC03P039486



20639452426 39452457 + GC03P039493



20739452426 39452457 + GC03P039482



20839452426 39452457 + GC03P039492



20939452426 39452457 + PIR46422
Exon structure




21039452544 39452698 + GC03P039487



21139452545 39452698 + SNORA62
Exon structure

6044 ENSG00000202363 small nucleolar RNA, H/ACA box 62
21239452610 39452697 + GC03P039494



21339458971 39459056 + ENSG00000264724
Exon structure


ENSG00000264724
21439462167 39465596 + GC03P039496



21539508689 39570970 + MOBP
Exon structure
Hs.121333 4336 ENSG00000168314 myelin-associated oligodendrocyte basic protein
21639509064 39570988 + GC03P039509



21739685129 39686196 + NFU1P1
Exon structure

100132681 ENSG00000230757 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) pseudogene 1
21839692632 39692675 - GC03M039692



21939693029 39693057 - GC03M039693



22039698059 39698087 - GC03M039698



22140011615 40011757 + GC03P040014



22240011616 40011757 + RNU4-56P
Exon structure

hugo2008 ENSG00000201570 RNA, U4 small nuclear 56, pseudogene
22340067838 40067869 - GC03M040067



22439850405 40301812 + MYRIP
Exon structure
Hs.594535 25924 ENSG00000170011 myosin VIIA and Rab interacting protein
22540250496 40250793 + RN7SL411P
Exon structure

hugo1187 ENSG00000265327 RNA, 7SL, cytoplasmic 411, pseudogene
22640280098 40280232 + GC03P040282



22740280099 40280232 + ENSG00000202517
Exon structure


ENSG00000202517
22840214636 40351189 - EIF1B-AS1
Exon structure
Hs.660388 440952
EIF1B antisense RNA 1
22940342757 40351182 - GC03M040347



23040342756 40351189 + GC03P040346



23140342757 40351189 - GC03M040346



23240351213 40353005 + GC03P040352



23340351173 40353915 + EIF1B
Exon structure
Hs.315230 10289 ENSG00000114784 eukaryotic translation initiation factor 1B
23440364206 40364770 - PGAM1P3
Exon structure

100873887 ENSG00000230274 phosphoglycerate mutase 1 pseudogene 3
23540355293 40494820 - ENTPD3-AS1
Exon structure
Hs.619663 285266 ENSG00000223797 ENTPD3 antisense RNA 1
23640428647 40470110 + ENTPD3
Exon structure
Hs.441145 956 ENSG00000168032 ectonucleoside triphosphate diphosphohydrolase 3
23740450439 40450456 - GC03M040450



23840487844 40494776 + GC03P040490



23940498822 40498857 + GC03P040520



24040498794 40503623 + GC03P040519



24140498783 40503861 + RPL14
Exon structure
Hs.446522 9045 ENSG00000188846 ribosomal protein L14
24240506241 40506267 + PIR56082
Exon structure




24340503867 40508645 - GC03M040505



24440503867 40508661 + GC03P040517



24540508031 40508648 + GC03P040521



24640507957 40510078 + ENSG00000272452
Exon structure


ENSG00000272452
24740518633 40523619 + GC03P040523



24840518604 40531728 + ZNF619
Exon structure
Hs.407159 285267 ENSG00000177873 zinc finger protein 619
24940540382 40540494 - RNU5B-2P
Exon structure

100147750 ENSG00000199906 RNA, U5B small nuclear 2, pseudogene
25040541924 40542535 - GC03M040542



25140547483 40560227 + ZNF620
Exon structure
Hs.581541 253639 ENSG00000177842 zinc finger protein 620
25240566369 40616176 + ZNF621
Exon structure
Hs.19977 285268 ENSG00000172888 zinc finger protein 621
25340627960 40628958 - RPL5P10
Exon structure

645807 ENSG00000234067 ribosomal protein L5 pseudogene 10
25440628026 40628919 - GC03M040629



25540637613 40639010 - EEF1GP3
Exon structure

651628 ENSG00000226845 eukaryotic translation elongation factor 1 gamma pseudogene 3
25640644616 40646918 - ENSG00000226302
Exon structure


ENSG00000226302
25740684765 40685532 + GC03P040687



25840739740 40740926 - HMGN2P24
Exon structure

729505 ENSG00000229072 high mobility group nucleosomal binding domain 2 pseudogene 24
25940740557 40740829 - GC03M040742



26040758901 40762498 - GC03M040761



26140803036 40803290 + GC03P040804



26240803003 40803347 + RPS27P4
Exon structure

389112 ENSG00000234287 ribosomal protein S27 pseudogene 4
26340807698 40904117 + ENSG00000231873
Exon structure


ENSG00000231873