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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 3

   GeneLoc map region (36,696,802 - 40,794,010 bp) around gene/marker "SCN10A"

   Explanation:
   SCN10A is located at 38,696,802-38,794,010 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
136732267 36734404 - GC03M036732



236712422 36764204 - DCLK3
Exon structure
Hs.631907 85443 ENSG00000163673 doublecortin-like kinase 3
336768995 36772585 - LOC105377029
Exon structure

105377029

436766643 36784167 - HSPD1P6
Exon structure

645548 ENSG00000230067 heat shock 60kDa protein 1 (chaperonin) pseudogene 6
536775892 36784280 - LOC105377030
Exon structure

105377030

636819276 36822892 - LOC105377031
Exon structure

105377031 ENSG00000279727
736823151 36825158 - ENSG00000281100
Exon structure


ENSG00000281100
836880184 36880729 - ENSG00000234073
Exon structure


ENSG00000234073
936882863 36900912 - GC03M036882



1036826817 36990981 - TRANK1
Exon structure
Hs.170999 9881 ENSG00000168016 tetratricopeptide repeat and ankyrin repeat containing 1
1136968190 36968316 - GC03M036968



1236968191 36968316 - RNU6ATAC4P
Exon structure

100151687 ENSG00000210181 RNA, U6atac small nuclear 4, pseudogene
1336968644 36969114 - GC03M036969



1436973117 36973672 - ENSG00000272334
Exon structure


ENSG00000272334
1536976233 36977040 + PRADC1P1
Exon structure

645571 ENSG00000236165 protease-associated domain containing 1 pseudogene 1
1636985043 36993304 - EPM2AIP1
Exon structure
Hs.28020 9852 ENSG00000178567 EPM2A (laforin) interacting protein 1
1737016398 37017034 - RPL29P11
Exon structure

100131713 ENSG00000224858 ribosomal protein L29 pseudogene 11
1837016520 37017014 - GC03M037016



1936993332 37050918 + MLH1
Exon structure
Hs.195364 4292 ENSG00000076242 mutL homolog 1
2037025637 37025697 + GC03P037025



2137025637 37025697 + GC03P037026



2237069733 37069750 - GC03M037070



2337093134 37093234 - GC03M037093



2437093133 37093234 - ENSG00000206645
Exon structure


ENSG00000206645
2537052626 37183689 - LRRFIP2
Exon structure
Hs.740522 9209 ENSG00000093167 leucine rich repeat (in FLII) interacting protein 2
2637134351 37135164 + UBE2D3P2
Exon structure

100130139 ENSG00000225558 ubiquitin-conjugating enzyme E2D 3 pseudogene 2
2737134658 37135102 + GC03P037134



2837140326 37140430 + GC03P037140



2937140327 37140430 + RNU6-1301P
Exon structure

106481591 ENSG00000199594 RNA, U6 small nuclear 1301, pseudogene
3037141545 37144182 - UBE2FP1
Exon structure

100421436 ENSG00000224080 ubiquitin-conjugating enzyme E2F (putative) pseudogene 1
3137143512 37143958 - GC03M037143



3236930249 37403563 + GC03P036930



3337176396 37182633 + GC03P037179



3437182107 37182734 + ENSG00000271993
Exon structure


ENSG00000271993
3537175864 37196722 + LOC105377132
Exon structure

105377132

3637196204 37196666 + ENSG00000231449
Exon structure


ENSG00000231449
3737196234 37196669 + RPS16P4
Exon structure

100271068
ribosomal protein S16 pseudogene 4
3837203929 37209547 + LOC105377642
Exon structure

105377642

3937216779 37217988 + ENSG00000271653
Exon structure


ENSG00000271653
4037241789 37244177 - ENSG00000270194
Exon structure


ENSG00000270194
4137255863 37256470 + GC03P037255



4237275537 37278152 + TCEA1P2
Exon structure

399511 ENSG00000230409 transcription elongation factor A (SII), 1 pseudogene 2
4337243177 37366879 + GOLGA4
Exon structure
Hs.344151 2803 ENSG00000144674 golgin A4
4437341649 37341766 + RNA5SP129
Exon structure

100873399 ENSG00000222208 RNA, 5S ribosomal pseudogene 129
4537379121 37383264 + LOC105377032
Exon structure

105377032

4637386269 37435497 + C3orf35
Exon structure
Hs.475945 339883 ENSG00000198590 chromosome 3 open reading frame 35
4737573150 37573201 - GC03M037573



4837573151 37573213 - RNU7-73P
Exon structure

100151670 ENSG00000239105 RNA, U7 small nuclear 73 pseudogene
4937452115 37823514 + ITGA9
Exon structure
Hs.113157 3680 ENSG00000144668 integrin, alpha 9
5037721129 37721147 + GC03P037721



5137748071 37748935 + RPL21P135
Exon structure

100419391 ENSG00000235482 ribosomal protein L21 pseudogene 135
5237748110 37748900 + GC03P037748



5337789783 37790532 - NDUFAF4P3
Exon structure

100422532 ENSG00000236411 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 3
5437745432 37861780 - ITGA9-AS1
Exon structure

101928153 ENSG00000235257 ITGA9 antisense RNA 1
5537861960 37984469 + CTDSPL
Exon structure
Hs.475963 10217 ENSG00000144677 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
5637965723 37965809 + GC03P037965



5737969404 37969480 + MIR26A1
Exon structure

407015 ENSG00000199075 microRNA 26a-1
5837979368 37979436 + GC03P037979



5937987975 38007188 + VILL
Exon structure
Hs.103665 50853 ENSG00000136059 villin-like
6038014567 38014667 + GC03P038014



6138014568 38014669 + ENSG00000200579
Exon structure


ENSG00000200579
6238007496 38029762 - PLCD1
Exon structure
Hs.80776 5333 ENSG00000187091 phospholipase C, delta 1
6338051278 38052400 + PPP2R2DP1
Exon structure

100327036 ENSG00000231668 protein phosphatase 2, regulatory subunit B, delta pseudogene 1
6438048903 38057434 - GC03M038048



6538038605 38124025 + DLEC1
Exon structure
Hs.714499 9940 ENSG00000008226 deleted in lung and esophageal cancer 1
6638103490 38122350 - LOC105377033
Exon structure

105377033

6738115505 38115532 + PIR60395
Exon structure




6838103129 38137242 - ACAA1
Exon structure
Hs.643487 30 ENSG00000060971 acetyl-CoA acyltransferase 1
6938125292 38125394 - ENSG00000201965
Exon structure


ENSG00000201965
7038125293 38125394 - GC03M038125



7138138363 38138389 - PIR37756
Exon structure




7238138478 38143022 + MYD88
Exon structure
Hs.82116 4615 ENSG00000172936 myeloid differentiation primary response 88
7338156046 38165478 - LOC101928234
Exon structure

101928234

7438165089 38255488 + OXSR1
Exon structure
Hs.475970 9943 ENSG00000172939 oxidative stress responsive 1
7538253232 38253262 + PIR62277
Exon structure




7638253232 38253262 + GC03P038253



7738268022 38270881 - LOC101409262
Exon structure

101409262 ENSG00000237982
7838270283 38270767 - GC03M038270



7938265807 38278315 + SLC22A13
Exon structure
Hs.225941 9390 ENSG00000172940 solute carrier family 22 (organic anion/urate transporter), member 13
8038281430 38318575 + SLC22A14
Exon structure
Hs.165559 9389 ENSG00000144671 solute carrier family 22, member 14
8138303773 38303879 - RNU6-235P
Exon structure

106479671 ENSG00000199514 RNA, U6 small nuclear 235, pseudogene
8238303772 38303879 - GC03M038303



8338325237 38329070 - DLEC1P1
Exon structure

100421153 ENSG00000230123 deleted in lung and esophageal cancer 1 pseudogene 1
8438391680 38391706 + PIR42930
Exon structure




8538346760 38453041 + XYLB
Exon structure
Hs.659985 9942 ENSG00000093217 xylulokinase homolog (H. influenzae)
8638451027 38454820 - ACVR2B-AS1
Exon structure
Hs.570596 100128640 ENSG00000229589 ACVR2B antisense RNA 1
8738453851 38493142 + ACVR2B
Exon structure
Hs.174273 93 ENSG00000114739 activin A receptor, type IIB
8838490724 38493142 + GC03P038491



8938494063 38494310 - GC03M038494



9038505480 38505581 - ENSG00000207512
Exon structure


ENSG00000207512
9138505481 38505581 - GC03M038505



9238515448 38515830 - DDTP1
Exon structure

101060160 ENSG00000230683 D-dopachrome tautomerase pseudogene 1
9338496127 38542161 + EXOG
Exon structure
Hs.517897 9941 ENSG00000157036 endo/exonuclease (5'-3'), endonuclease G-like
9438524376 38524405 + PIR53114
Exon structure




9538526547 38526576 + PIR53009
Exon structure




9638526799 38526828 + PIR61865
Exon structure




9738526746 38527362 - RPL18AP7
Exon structure

100133038 ENSG00000232439 ribosomal protein L18a pseudogene 7
9838527173 38527203 + PIR31167
Exon structure




9938527173 38527203 + GC03P038527



10038527211 38527244 + PIR44083
Exon structure




10138527668 38527697 + PIR49321
Exon structure




10238532305 38532333 + PIR46951
Exon structure




10338535680 38535708 + PIR44042
Exon structure




10438538341 38538370 + PIR55116
Exon structure




10538560152 38560336 - GC03M038560



10638548057 38649673 - SCN5A
Exon structure
Hs.517898 6331 ENSG00000183873 sodium channel, voltage gated, type V alpha subunit
10738696802 38794010 - SCN10A
Exon structure
Hs.250443 6336 ENSG00000185313 sodium channel, voltage gated, type X alpha subunit
10838800296 38800394 - ENSG00000222719
Exon structure


ENSG00000222719
10938813624 38816345 + LOC105377034
Exon structure

105377034

11038823902 38825302 + ENSG00000231243
Exon structure


ENSG00000231243
11138847236 38847288 - PIR54995
Exon structure




11238845769 38953651 - SCN11A
Exon structure
Hs.591657 11280 ENSG00000168356 sodium channel, voltage gated, type XI alpha subunit
11338970338 38970366 - PIR61629
Exon structure




11438950448 39052002 - LOC105377643
Exon structure

105377643

11539025987 39026093 + RNU6-1227P
Exon structure

106481567 ENSG00000206708 RNA, U6 small nuclear 1227, pseudogene
11639025990 39026093 + GC03P039025



11739051986 39096671 + WDR48
Exon structure
Hs.109778 57599 ENSG00000114742 WD repeat domain 48
11839097627 39097657 - PIR55888
Exon structure




11939097627 39097657 - GC03M039097



12039096599 39108363 - GORASP1
Exon structure
Hs.721946 64689 ENSG00000114745 golgi reassembly stacking protein 1, 65kDa
12139107661 39138994 + TTC21A
Exon structure
Hs.443935 199223 ENSG00000168026 tetratricopeptide repeat domain 21A
12239138206 39138266 + MIR6822
Exon structure

102466743 ENSG00000276236 microRNA 6822
12339141851 39154597 - CSRNP1
Exon structure
Hs.370950 64651 ENSG00000144655 cysteine-serine-rich nuclear protein 1
12439150903 39173071 + LOC101928263
Exon structure

101928263 ENSG00000214305
12539178833 39178861 + PIR56273
Exon structure




12639177764 39181521 + LOC105377035
Exon structure

105377035

12739183210 39192620 - XIRP1
Exon structure
Hs.737550; Hs.447868 165904 ENSG00000168334 xin actin binding repeat containing 1
12839201800 39210654 + LOC105377036
Exon structure

105377036

12939212661 39214678 + DSTNP4
Exon structure

729454 ENSG00000215034 destrin (actin depolymerizing factor) pseudogene 4
13039232520 39259464 + LOC102724104
Exon structure

102724104

13139263494 39281735 - CX3CR1
Exon structure
Hs.78913 1524 ENSG00000168329 chemokine (C-X3-C motif) receptor 1
13239285985 39287920 + ADAD1P1
Exon structure

100422386 ENSG00000270367 adenosine deaminase domain containing 1 (testis-specific) pseudogene 1
13339329706 39333680 + CCR8
Exon structure
Hs.113222 1237 ENSG00000179934 chemokine (C-C motif) receptor 8
13439334979 39335939 + GC03P039335



13539334915 39336077 + HNRNPA1P21
Exon structure

344697 ENSG00000228168 heterogeneous nuclear ribonucleoprotein A1 pseudogene 21
13639338129 39338879 - ENSG00000238267
Exon structure


ENSG00000238267
13739358545 39359922 + EEF1A1P24
Exon structure

645715 ENSG00000223668 eukaryotic translation elongation factor 1 alpha 1 pseudogene 24
13839342852 39383223 - LOC105377644
Exon structure

105377644

13939370218 39370251 + GC03P039372



14039374722 39381013 + LOC105377037
Exon structure

105377037

14139383324 39397351 + SLC25A38
Exon structure
Hs.369615 54977 ENSG00000144659 solute carrier family 25, member 38
14239393629 39406041 - GC03M039393



14339408388 39408539 + GC03P039409



14439408390 39408538 + GC03P039417



14539408389 39408539 + SNORA6
Exon structure
Hs.745521 574040 ENSG00000206760 small nucleolar RNA, H/ACA box 6
14639408390 39408539 + GC03P039413



14739406689 39412542 + RPSA
Exon structure
Hs.449909 3921 ENSG00000168028 ribosomal protein SA
14839410917 39410947 + GC03P039411



14939410917 39410947 + GC03P039410



15039410917 39410947 + GC03P039414



15139410917 39410947 + GC03P039415



15239410917 39410947 + PIR53261
Exon structure




15339410917 39410947 + GC03P039419



15439410935 39410966 + GC03P039416



15539410935 39410966 + PIR46422
Exon structure




15639410935 39410966 + GC03P039418



15739410935 39410966 + GC03P039420



15839410935 39410966 + GC03P039421



15939411053 39411207 + GC03P039412



16039411054 39411207 + SNORA62
Exon structure

6044 ENSG00000202363 small nucleolar RNA, H/ACA box 62
16139411119 39411206 + GC03P039422



16239417480 39417565 + ENSG00000264724
Exon structure


ENSG00000264724
16339456699 39459303 + LOC105377038
Exon structure

105377038

16439467198 39529497 + MOBP
Exon structure
Hs.121333 4336 ENSG00000168314 myelin-associated oligodendrocyte basic protein
16539643638 39644822 + NFU1P1
Exon structure

100132681 ENSG00000230757 NFU1 iron-sulfur cluster scaffold pseudogene 1
16639778654 39802904 + LOC105377039
Exon structure

105377039

16739810217 39824679 - GC03M039810



16839933321 39934432 - GC03M039933



16939936313 39940128 + GC03P039936



17039970124 39970266 + GC03P039970



17139970125 39970266 + RNU4-56P
Exon structure

106480547 ENSG00000201570 RNA, U4 small nuclear 56, pseudogene
17239808914 40260321 + MYRIP
Exon structure
Hs.594535 25924 ENSG00000170011 myosin VIIA and Rab interacting protein
17340043443 40054725 - GC03M040043



17440062087 40083774 - LOC105377040
Exon structure

105377040

17540184378 40200230 - LOC105377645
Exon structure

105377645

17640209005 40209304 + RN7SL411P
Exon structure

106481035 ENSG00000265327 RNA, 7SL, cytoplasmic 411, pseudogene
17740238607 40238741 + GC03P040238



17840238608 40238741 + ENSG00000202517
Exon structure


ENSG00000202517
17940173145 40309698 - EIF1B-AS1
Exon structure
Hs.660388 440952 ENSG00000280739 EIF1B antisense RNA 1
18040264681 40275882 + GC03P040264



18140309682 40312424 + EIF1B
Exon structure
Hs.315230 10289 ENSG00000114784 eukaryotic translation initiation factor 1B
18240322715 40323279 - PGAM1P3
Exon structure

100873887 ENSG00000230274 phosphoglycerate mutase 1 pseudogene 3
18340337973 40338743 + GC03P040337



18440381615 40382821 - GC03M040381



18540313802 40453329 - ENTPD3-AS1
Exon structure
Hs.619663 285266 ENSG00000223797 ENTPD3 antisense RNA 1
18640389981 40405093 + GC03P040390



18740387156 40428626 + ENTPD3
Exon structure
Hs.441145 956 ENSG00000168032 ectonucleoside triphosphate diphosphohydrolase 3
18840457292 40468587 + RPL14
Exon structure
Hs.446522 9045 ENSG00000188846 ribosomal protein L14
18940464750 40464776 + PIR56082
Exon structure




19040477113 40490237 + ZNF619
Exon structure
Hs.407159 285267 ENSG00000177873 zinc finger protein 619
19140498891 40499003 - GC03M040498



19240498891 40499003 - RNU5B-2P
Exon structure

100147750 ENSG00000199906 RNA, U5B small nuclear 2, pseudogene
19340500433 40501044 - GC03M040500



19440504989 40518736 + ZNF620
Exon structure
Hs.581541 253639 ENSG00000177842 zinc finger protein 620
19540524316 40574685 + ZNF621
Exon structure
Hs.19977 285268 ENSG00000172888 zinc finger protein 621
19640586535 40587428 - GC03M040586



19740586486 40587484 - RPL5P10
Exon structure

645807 ENSG00000234067 ribosomal protein L5 pseudogene 10
19840596122 40597519 - EEF1GP3
Exon structure

651628 ENSG00000226845 eukaryotic translation elongation factor 1 gamma pseudogene 3
19940603125 40605427 - ENSG00000226302
Exon structure


ENSG00000226302
20040627615 40645433 + LOC105377041
Exon structure

105377041

20140698249 40699435 - HMGN2P24
Exon structure

729505 ENSG00000229072 high mobility group nucleosomal binding domain 2 pseudogene 24
20240699066 40699338 - GC03M040699



20340726429 40734889 + GC03P040726



20440761545 40761799 + ENSG00000234287
Exon structure


ENSG00000234287
20540761512 40761856 + RPS27P4
Exon structure

389112
ribosomal protein S27 pseudogene 4
20640766207 40862626 + ENSG00000231873
Exon structure


ENSG00000231873
20740719862 40911068 + LOC105377043
Exon structure

105377043