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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 2

   GeneLoc map region (215,277,137 - 219,347,776 bp) around gene/marker "SMARCAL1"

   Explanation:
   SMARCAL1 is located at 217,277,137-217,347,776 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
1215275801 215279927 + GC02P215276



2215114764 215548970 - ENSG00000197585
Exon structure


ENSG00000197585
3215275789 215443683 + VWC2L
Exon structure
Hs.534834 402117 ENSG00000174453 von Willebrand factor C domain containing protein 2-like
4215374920 215401614 + VWC2L-IT1
Exon structure
Hs.665982 100885780 ENSG00000224257 VWC2L intronic transcript 1 (non-protein coding)
5215439780 215439927 + GC02P215441



6215442695 215442712 - GC02M215442



7215509672 215522556 + GC02P215509



8215562321 215562788 + ENSAP3
Exon structure

100128203 ENSG00000177261 endosulfine alpha pseudogene 3
9215593262 215595234 - GC02M215593



10215590370 215674428 - BARD1
Exon structure
Hs.591642 580 ENSG00000138376 BRCA1 associated RING domain 1
11215674892 215698960 + GC02P215679



12215701173 215701595 + GC02P215701



13215711671 215711805 + ENSG00000207274
Exon structure


ENSG00000207274
14215711670 215711848 + GC02P215725



15215711944 215712064 + PIR31831
Exon structure




16215711843 215712226 + RPL10P6
Exon structure

285176 ENSG00000230076
17215674953 215827998 + ENSG00000229267
Exon structure


ENSG00000229267
18215764885 215764908 + GC02P215769



19215764858 215765138 + GC02P215770



20215825116 215826786 + GC02P215827



21215886722 215906980 + ENSG00000227769
Exon structure


ENSG00000227769
22215796266 216003151 - ABCA12
Exon structure
Hs.134585 26154 ENSG00000144452 ATP-binding cassette, sub-family A (ABC1), member 12
23216028446 216028476 + GC02P216029



24216085793 216085820 + PIR56994
Exon structure




25216139715 216142670 + ENSG00000237571
Exon structure


ENSG00000237571
26216167489 216167587 + ENSG00000238663
Exon structure


ENSG00000238663
27216176715 216190862 + GC02P216178



28216176540 216214496 + ATIC
Exon structure
Hs.90280 471 ENSG00000138363 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
29216199682 216199708 + PIR36885
Exon structure




30216203593 216210310 + GC02P216203



31216213708 216214479 + GC02P216221



32216213884 216214479 + GC02P216220



33216224632 216226762 + DNAPTP3
Exon structure

100507488

34216225589 216228363 - GC02M216226



35216229093 216230240 - GC02M216229



36216232402 216237205 - GC02M216232



37216236957 216238098 - GC02M216239



38216243984 216246962 - GC02M216250



39216243928 216248206 - GC02M216249



40216225163 216300895 - FN1
Exon structure
Hs.203717 2335 ENSG00000115414 fibronectin 1
41216273042 216274673 - GC02M216273



42216284012 216285993 - GC02M216284



43216300976 216301715 + ENSG00000230695
Exon structure


ENSG00000230695
44216318430 216328594 + ENSG00000225166
Exon structure


ENSG00000225166
45216341390 216344971 + ENSG00000228618
Exon structure


ENSG00000228618
46216341370 216351340 + GC02P216344



47216395170 216410249 - ENSG00000234938
Exon structure


ENSG00000234938
48216395170 216410249 + GC02P216400



49216444130 216447358 - ENSG00000227981
Exon structure


ENSG00000227981
50216444130 216447358 + GC02P216446



51216397856 216578618 + ENSG00000237525
Exon structure


ENSG00000237525
52216582766 216584147 + ENSG00000230838
Exon structure


ENSG00000230838
53216476286 216708445 - LINC00607
Exon structure
Hs.655713 646324 ENSG00000235770 long intergenic non-protein coding RNA 607
54216475717 216713606 - GC02M216475



55216669454 216669704 - ENSG00000216721
Exon structure


ENSG00000216721
56216734646 216735241 + ENSG00000227824
Exon structure


ENSG00000227824
57216743556 216743642 - ENSG00000212055
Exon structure


ENSG00000212055
58216773381 216777417 + GC02P216776



59216804031 216806442 - ENSG00000226276
Exon structure


ENSG00000226276
60216807314 216898819 - MREG
Exon structure
Hs.620391 55686 ENSG00000118242 melanoregulin
61216861052 216947678 - PECR
Exon structure
Hs.281680 55825 ENSG00000115425 peroxisomal trans-2-enoyl-CoA reductase
62216908695 216922670 - GC02M216908



63216930173 216947678 - GC02M216930



64216946589 216967506 + TMEM169
Exon structure
Hs.334916 92691 ENSG00000163449 transmembrane protein 169
65216977819 216977847 + PIR31186
Exon structure




66216990646 216992713 + GC02P216990



67217021065 217021534 - POLHP1
Exon structure

hugo521 ENSG00000232970 polymerase (DNA directed), eta pseudogene 1
68216972187 217071026 + XRCC5
Exon structure
Hs.388739 7520 ENSG00000079246 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
69217039619 217040755 - LOC100421349
Exon structure

100421349 ENSG00000236478
70217068739 217070145 + GC02P217068



71217076127 217078242 + GC02P217092



72217074540 217084915 + GC02P217074



73217082078 217082104 + PIR45325
Exon structure




74217081612 217084915 + PKI55
Exon structure
Hs.56876 150967 ENSG00000260804 DKFZp434H1419 (est)
75217124318 217130853 + ENSG00000231092
Exon structure


ENSG00000231092
76217168048 217186460 + ENSG00000233581
Exon structure


ENSG00000233581
77217122585 217236750 - MARCH4
Exon structure
Hs.170388 57574 ENSG00000144583 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase
78217216125 217216225 + GC02P217219



79217216126 217216227 + ENSG00000207303
Exon structure


ENSG00000207303
80217259850 217264406 + GC02P217263



81217250011 217277419 - ENSG00000235042
Exon structure


ENSG00000235042
82217277488 217279086 + GC02P217278



83217291778 217297495 + GC02P217291



84217277137 217347776 + SMARCAL1
Exon structure
Hs.516674 50485 ENSG00000138375 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
85217347755 217351919 - ENSG00000241520
Exon structure


ENSG00000241520
86217343753 217363484 - ENSG00000232485
Exon structure


ENSG00000232485
87217351335 217363469 - LOC100507554
Exon structure
Hs.132598 100507554
Uncharacterized LOC100507554 (est)
88217363991 217364018 + PIR48887
Exon structure




89217363520 217366190 + GC02P217365



90217374176 217394310 + GC02P217374



91217362912 217443903 + RPL37A
Exon structure
Hs.433701 6168 ENSG00000197756 ribosomal protein L37a
92217398740 217443933 + GC02P217398



93217422945 217424323 - GC02M217422



94217455149 217471661 - AC073321.3
Exon structure

101928232 ENSG00000224391
95217469494 217475925 + ENSG00000225794
Exon structure


ENSG00000225794
96217474994 217475760 - PSMB3P2
Exon structure

130700 ENSG00000235444 proteasome (prosome, macropain) subunit, beta type, 3 pseudogene 2
97217497551 217529159 + IGFBP2
Exon structure
Hs.438102 3485 ENSG00000115457 insulin-like growth factor binding protein 2, 36kDa
98217529865 217531829 + GC02P217529



99217536828 217560272 - IGFBP5
Exon structure
Hs.607212 3488 ENSG00000115461 insulin-like growth factor binding protein 5
100217650458 217650902 - RPL31P14
Exon structure

100129310 ENSG00000237930 ribosomal protein L31 pseudogene 14
101217650497 217650867 - GC02M217652



102217658212 217658323 - RNA5SP120
Exon structure

100873390 ENSG00000222832 RNA, 5S ribosomal pseudogene 120
103217664331 217670058 + ENSG00000229352
Exon structure


ENSG00000229352
104217670460 217670852 - FABP5P14
Exon structure

100873957 ENSG00000234588 fatty acid binding protein 5 pseudogene 14
105217684153 217684182 - PIR53952
Exon structure




106217685854 217696356 + GC02P217685



107217692810 217698159 - GC02M217695



108217559187 217858802 + ENSG00000236886
Exon structure


ENSG00000236886
109217719112 217719855 - ENSG00000231597
Exon structure


ENSG00000231597
110217719086 217719914 - GC02M217721



111217720095 217721327 + GC02P217720



112217724181 217724787 - TNP1
Exon structure
Hs.3017 7141 ENSG00000118245 transition protein 1 (during histone to protamine replacement)
113217726274 217730405 - GC02M217727



114217731055 217732536 - ENSG00000237479
Exon structure


ENSG00000237479
115217732735 217733879 + ENSG00000227021
Exon structure


ENSG00000227021
116217735495 217736362 + ENSG00000223874
Exon structure


ENSG00000223874
117217735164 217738655 - ENSG00000236295
Exon structure


ENSG00000236295
118217860629 217861213 + ENSG00000259855
Exon structure


ENSG00000259855
119217927047 217931700 - GC02M217930



120217956092 217969259 + GC02P217956



121218031864 218031883 + GC02P218034



122218041221 218041305 + ENSG00000251849
Exon structure


ENSG00000251849
123218088361 218092713 + GC02P218088



124218116279 218116598 + RN7SKP43
Exon structure

hugo790 ENSG00000251982 RNA, 7SK small nuclear pseudogene 43
125218126107 218133198 + GC02P218127



126218147462 218200843 + ENSG00000233143
Exon structure


ENSG00000233143
127218178389 218180772 + GC02P218179



128218209636 218209653 - GC02M218209



129218293771 218293835 + GC02P218296



130218148742 218621316 - DIRC3
Exon structure
Hs.572788 729582 ENSG00000231672 disrupted in renal carcinoma 3
131218558618 218561486 + LOC100533848
Exon structure

100533848 ENSG00000224414
132218625261 218626019 - RPL7L1P9
Exon structure

100128899 ENSG00000231035 ribosomal protein L7-like 1 pseudogene 9
133218664514 218665979 - ENSG00000256309
Exon structure


ENSG00000256309
134218674437 218675027 - GC02M218674



135218678432 218680091 - GC02M218678



136218664512 218867718 - TNS1
Exon structure
Hs.471381 7145 ENSG00000079308 tensin 1
137218823951 218824397 + GC02P218824



138218820768 218858457 + GC02P218821



139218843430 218857338 + ENSG00000223923
Exon structure


ENSG00000223923
140218851463 218855752 - GC02M218851



141218899683 218937222 + GC02P218900



142218923877 218926013 - GC02M218929



143218923878 218930452 - CXCR2P1
Exon structure
Hs.647858 3580 ENSG00000229754 chemokine (C-X-C motif) receptor 2 pseudogene 1
144218899657 218955304 + RUFY4
Exon structure
Hs.570069 285180 ENSG00000188282 RUN and FYVE domain containing 4
145218937594 218940443 + GC02P218937



146218961029 218961055 - PIR54369
Exon structure




147218977046 218977075 - GC02M218977



148218978375 218978401 + PIR44177
Exon structure




149218989997 218999569 + GC02P219020



150218989997 218999569 + GC02P219025



151218990427 218999569 + GC02P219026



152218990741 218999569 + GC02P219028



153218990751 218999569 + GC02P219030



154218990012 219001976 + CXCR2
Exon structure
Hs.846 3579 ENSG00000180871 chemokine (C-X-C motif) receptor 2
155218994032 218999569 + GC02P219031



156218999318 218999569 + GC02P219022



157218999676 219000012 + GC02P219032



158218999678 219000012 + GC02P219024



159219027568 219031718 - CXCR1
Exon structure
Hs.194778 3577 ENSG00000163464 chemokine (C-X-C motif) receptor 1
160219029884 219031697 - GC02M219036



161219029884 219031697 - GC02M219037



162219044545 219044577 + GC02P219044



163219049702 219049805 - ENSG00000238428
Exon structure


ENSG00000238428
164219064999 219066573 + HMGB1P9
Exon structure

654503 ENSG00000224159 high mobility group box 1 pseudogene 9
165219080693 219081873 - GC02M219080



166219081920 219103453 + GC02P219083



167219081817 219119079 + ARPC2
Exon structure
Hs.529303 10109 ENSG00000163466 actin related protein 2/3 complex, subunit 2, 34kDa
168219110549 219110641 + TRNAY9
Exon structure

100189253
transfer RNA tyrosine 9 (anticodon AUA)
169219114315 219118833 + GC02P219114



170219120042 219122087 + ENSG00000261338
Exon structure


ENSG00000261338
171219124219 219128582 + GPBAR1
Exon structure
Hs.160954 151306 ENSG00000179921 G protein-coupled bile acid receptor 1
172219128850 219134980 - AAMP
Exon structure
Hs.83347 14 ENSG00000127837 angio-associated, migratory cell protein
173219142524 219144804 - GC02M219142



174219138915 219157309 - TMBIM1
Exon structure
Hs.591605 64114 ENSG00000135926 transmembrane BAX inhibitor motif containing 1
175219136103 219182979 + GC02P219136



176219135115 219211516 + PNKD
Exon structure
Hs.98475 25953 ENSG00000127838 paroxysmal nonkinesigenic dyskinesia
177219193303 219193403 + ENSG00000238736
Exon structure


ENSG00000238736
178219204818 219205612 + GC02P219204



179219191612 219222689 - ENSG00000237281
Exon structure


ENSG00000237281
180219208284 219208311 + PIR59269
Exon structure




181219218765 219219348 + RPL19P5
Exon structure

646532 ENSG00000230580 ribosomal protein L19 pseudogene 5
182219220014 219220046 - GC02M219220



183219221586 219222513 + GC02P219223



184219221579 219232822 + CATIP
Exon structure
Hs.645453 375307 ENSG00000158428 ciliogenesis associated TTC17 interacting protein
185219231388 219232558 - CATIP-AS1
Exon structure

101928513 ENSG00000225062 CATIP antisense RNA 1
186219246892 219252307 + GC02P219248



187219246752 219261617 + SLC11A1
Exon structure
Hs.591607 6556 ENSG00000018280 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1
188219257313 219259358 + GC02P219257



189219263466 219263942 - ENSG00000273361
Exon structure


ENSG00000273361
190219263426 219264793 + GC02P219263



191219265310 219266435 + GC02P219265



192219262979 219270664 + CTDSP1
Exon structure
Hs.444468 58190 ENSG00000144579 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
193219267369 219267445 + MIR26B
Exon structure

407017 ENSG00000199121 microRNA 26b
194219267357 219267478 + GC02P219273



195219267357 219267478 + GC02P219274



196219283815 219318018 + VIL1
Exon structure
Hs.654595 7429 ENSG00000127831 villin 1
197219339473 219351101 - GC02M219339



198219314974 219433084 - USP37
Exon structure
Hs.166068 57695 ENSG00000135913 ubiquitin specific peptidase 37