an academic website of the in association with
GeneLoc Home GeneCards Home MalaCards Home About GeneLoc Contact Us
Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 2

   GeneLoc map region (45,922,669 - 50,037,240 bp) around gene/marker "MSH6"

   Explanation:
   MSH6 is located at 47,922,669-48,037,240 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
145937441 45937513 - TRNAQ39P
Exon structure

100189473
transfer RNA glutamine 39 (anticodon UUG) pseudogene
245965310 45965327 + GC02P045965



345879499 46211820 + GC02P045879



446144605 46144637 + GC02P046144



545878484 46415129 + PRKCE
Exon structure
Hs.580351 5581 ENSG00000171132 protein kinase C, epsilon
646231081 46231448 - GC02M046233



746231052 46231560 - RPL26P15
Exon structure

100270965 ENSG00000233829 ribosomal protein L26 pseudogene 15
846305154 46305967 - ENSG00000232696
Exon structure


ENSG00000232696
946393928 46395117 - ENSG00000231336
Exon structure


ENSG00000231336
1046483999 46484316 - RPL36AP14
Exon structure

100271324 ENSG00000233335 ribosomal protein L36a pseudogene 14
1146520809 46523596 - GC02M046523



1246520806 46613842 + EPAS1
Exon structure
Hs.468410 2034 ENSG00000116016 endothelial PAS domain protein 1
1346619436 46621306 - ENSG00000228100
Exon structure


ENSG00000228100
1446619456 46621335 - GC02M046620



1546675365 46675650 - RN7SL817P
Exon structure

hugo1630 ENSG00000241791 RNA, 7SL, cytoplasmic 817, pseudogene
1646656329 46711564 + TMEM247
Exon structure
Hs.733348 388946 ENSG00000187600 transmembrane protein 247
1746726369 46727385 - GC02M046729



1846726870 46728417 + ENSG00000253515
Exon structure


ENSG00000253515
1946717889 46769696 - ATP6V1E2
Exon structure
Hs.659656 90423 ENSG00000250565 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2
2046755016 46768722 - GC02M046766



2146761138 46769141 - FLJ41757
Exon structure
Hs.437691 440862
Uncharacterized LOC440862 (est)
2246762835 46768609 + GC02P046765



2346768945 46811827 + RHOQ
Exon structure
Hs.709193 23433 ENSG00000119729 ras homolog family member Q
2446795395 46807377 - LOC100506142
Exon structure
Hs.658541 100506142 ENSG00000250116 Uncharacterized LOC100506142 (est)
2546795376 46807858 - GC02M046798



2646807423 46808185 + GC02P046807



2746808076 46844258 - PIGF
Exon structure
Hs.468415 5281 ENSG00000151665 phosphatidylinositol glycan anchor biosynthesis, class F
2846843555 46852881 + CRIPT
Exon structure
Hs.133998 9419 ENSG00000119878 cysteine-rich PDZ-binding protein
2946865335 46897917 + GC02P046868



3046908201 46911684 + GC02P046911



3146909764 46910666 - GC02M046912



3246925253 46926053 - GC02M046925



3346926091 46990268 + SOCS5
Exon structure
Hs.468426 9655 ENSG00000171150 suppressor of cytokine signaling 5
3447004922 47007384 + ENSG00000260977
Exon structure


ENSG00000260977
3547043807 47046597 + GC02P047049



3647043807 47049799 + LINC01118
Exon structure
Hs.728895 388948 ENSG00000222005 long intergenic non-protein coding RNA 1118
3747043836 47086146 + LINC01119
Exon structure
Hs.114449 100134259 ENSG00000239332 long intergenic non-protein coding RNA 1119
3847079159 47080635 - ENSG00000226548
Exon structure


ENSG00000226548
3947090678 47102328 + GC02P047091



4047130867 47130897 - PIR31573
Exon structure




4147126414 47135817 + ENSG00000228925
Exon structure


ENSG00000228925
4247129009 47168994 - MCFD2
Exon structure
Hs.662152 90411 ENSG00000180398 multiple coagulation factor deficiency 2
4347131994 47168912 - GC02M047131



4447183754 47184027 - ENSG00000272814
Exon structure


ENSG00000272814
4547184075 47184102 + PIR42793
Exon structure




4647143296 47303276 + TTC7A
Exon structure
Hs.370603 57217 ENSG00000068724 tetratricopeptide repeat domain 7A
4747240797 47240814 - GC02M047242



4847262418 47267663 - ENSG00000233845
Exon structure


ENSG00000233845
4947273454 47277966 + GC02P047273



5047294961 47298343 + ENSG00000225187
Exon structure


ENSG00000225187
5147327415 47327457 - GC02M047327



5247272677 47382517 - C2orf61
Exon structure
Hs.531575 285051 ENSG00000239605 chromosome 2 open reading frame 61
5347293080 47403650 - ENSG00000273269
Exon structure


ENSG00000273269
5447387221 47403740 - CALM2
Exon structure
Hs.468442 805 ENSG00000143933 calmodulin 2 (phosphorylase kinase, delta)
5547445239 47448487 + GC02P047445



5647452933 47466364 + ENSG00000226087
Exon structure


ENSG00000226087
5747419544 47572213 - AC073283.4
Exon structure

101927043 ENSG00000234690
5847507897 47507930 - PIR36991
Exon structure




5947514119 47514533 - GC02M047514



6047528557 47528583 + PIR58315
Exon structure




6147532963 47533189 - GC02M047532



6247533482 47533950 - GC02M047533



6347562453 47562653 + GC02P047566



6447558199 47571656 + BCYRN1
Exon structure

618 ENSG00000236824 brain cytoplasmic RNA 1
6547586644 47586916 - RN7SKP119
Exon structure

hugo578 ENSG00000222685 RNA, 7SK small nuclear pseudogene 119
6647572297 47614740 + EPCAM
Exon structure
Hs.542050 4072 ENSG00000119888 epithelial cell adhesion molecule
6747604813 47604909 + GC02P047612



6847604814 47604909 + MIR559
Exon structure

693144 ENSG00000207923 microRNA 559
6947604868 47604889 - GC02M047604



7047630343 47641537 + GC02P047637



7147639670 47657022 + GC02P047642



7247639672 47657022 + GC02P047644



7347660996 47661025 - GC02M047660



7447661146 47661178 - GC02M047661



7547661225 47661254 - GC02M047662



7647661596 47661628 + GC02P047661



7747630108 47789450 + MSH2
Exon structure
Hs.597656 4436 ENSG00000095002 mutS homolog 2
7847713153 47715691 - ENSG00000236558
Exon structure


ENSG00000236558
7947713153 47729008 - GC02M047714



8047739991 47746533 - GC02M047742



8147749735 47749766 + PIR43911
Exon structure




8247749736 47749766 + GC02P047751



8347754603 47754629 + PIR47133
Exon structure




8447754141 47762338 + LOC644093
Exon structure
Hs.734158 644093 ENSG00000235760 HCG2040054 (est)
8547743720 47798078 - KCNK12
Exon structure
Hs.591586 56660 ENSG00000184261 potassium channel, subfamily K, member 12
8647774372 47774399 + PIR54322
Exon structure




8747799601 47801998 + ENSG00000269563
Exon structure


ENSG00000269563
8847810210 47810240 + GC02P047810



8947812880 47812908 + PIR40257
Exon structure




9047903897 47904118 + GC02P047903



9147917806 47918420 - RPL18AP6
Exon structure

285053 ENSG00000230979 ribosomal protein L18a pseudogene 6
9247918379 47918420 - GC02M047919



9347932607 47933175 + LOC100289315
Exon structure

100289315 ENSG00000224443
9447922955 47987698 + GC02P047925



9547958541 47959174 - ENSG00000224058
Exon structure


ENSG00000224058
9647922669 48037240 + MSH6
Exon structure
Hs.445052 2956 ENSG00000116062 mutS homolog 6
9748008518 48008604 + ENSG00000251872
Exon structure


ENSG00000251872
9848010309 48012115 + GC02P048011



9948024893 48025279 - RPL36AP15
Exon structure

100271325 ENSG00000235369 ribosomal protein L36a pseudogene 15
10048024965 48025230 - GC02M048027



10148033891 48041437 - GC02M048033



10248045060 48045091 - GC02M048046



10348016455 48132932 - FBXO11
Exon structure
Hs.352677 80204 ENSG00000138081 F-box protein 11
10448077476 48077816 + GC02P048080



10548063091 48115858 - GC02M048063



10648107651 48107668 - GC02M048107



10748110106 48111053 + RPS27AP7
Exon structure

728971 ENSG00000236549 ribosomal protein S27a pseudogene 7
10848110594 48111048 + GC02P048112



10948132817 48135306 + LOC100506235
Exon structure
Hs.246781 100506235 ENSG00000233230 Uncharacterized LOC100506235 (est)
11048166877 48167357 - ENSG00000226473
Exon structure


ENSG00000226473
11148216764 48217700 + VN1R18P
Exon structure

100133087
vomeronasal 1 receptor 18 pseudogene
11248293196 48293527 - GC02M048294



11348274643 48317508 + GC02P048278



11448168835 48468122 - ENSG00000230773
Exon structure


ENSG00000230773
11548340114 48345384 + GC02P048343



11648357865 48392255 + GC02P048361



11748423238 48425603 + GC02P048423



11848444714 48445038 + RN7SKP224
Exon structure

hugo694 ENSG00000201010 RNA, 7SK small nuclear pseudogene 224
11948444713 48445038 + GC02P048448



12048516472 48516803 - GC02M048516



12148527999 48528357 + GC02P048527



12248567825 48567965 - GC02M048571



12348567826 48567965 - RNU4-49P
Exon structure

hugo2001 ENSG00000251889 RNA, U4 small nuclear 49, pseudogene
12448541776 48606434 + FOXN2
Exon structure
Hs.468478 3344 ENSG00000170802 forkhead box N2
12548600498 48602289 + GC02P048600



12648667182 48667736 - ENSG00000272663
Exon structure


ENSG00000272663
12748667224 48667870 - GC02M048668



12848667737 48742531 + PPP1R21
Exon structure
Hs.654619 129285 ENSG00000162869 protein phosphatase 1, regulatory subunit 21
12948729060 48729163 - GC02M048733



13048729061 48729163 - ENSG00000202227
Exon structure


ENSG00000202227
13148752494 48787278 + GC02P048752



13248784365 48784394 - GC02M048787



13348784555 48784587 - GC02M048785



13448784593 48784624 - GC02M048784



13548784634 48784663 - GC02M048788



13648756522 48826025 + STON1
Exon structure
Hs.44385 11037 ENSG00000243244 stonin 1
13748842093 48842125 - GC02M048843



13848842134 48842162 - GC02M048842



13948844995 48873692 + GC02P048845



14048859995 48860492 - ENSG00000239995
Exon structure


ENSG00000239995
14148859428 48895804 - GC02M048861



14248757064 49003656 + STON1-GTF2A1L
Exon structure

286749 ENSG00000068781 STON1-GTF2A1L readthrough
14348844937 48960287 + GTF2A1L
Exon structure
Hs.732016 11036 ENSG00000242441 general transcription factor IIA, 1-like
14448859428 48982880 - LHCGR
Exon structure
Hs.468490 3973 ENSG00000138039 luteinizing hormone/choriogonadotropin receptor
14548935909 48950653 - GC02M048935



14648996093 49003658 + GC02P048999



14749007741 49008034 + TCEB2P3
Exon structure

100856810 ENSG00000232285 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 3
14849074130 49074157 + PIR33303
Exon structure




14949115121 49115478 + GC02P049120



15049142404 49143726 - CTBP2P5
Exon structure

646936 ENSG00000214602 C-terminal binding protein 2 pseudogene 5
15149179431 49179679 - GC02M049179



15249245392 49245420 + PIR49362
Exon structure




15349189296 49381676 - FSHR
Exon structure
Hs.1428 2492 ENSG00000170820 follicle stimulating hormone receptor
15449288292 49288318 + PIR49342
Exon structure




15549436966 49457043 + GC02P049436



15649460932 49461038 - GC02M049464



15749460933 49461038 - ENSG00000206915
Exon structure


ENSG00000206915
15849465255 49465454 + GC02P049467



15949726199 49726228 + PIR34991
Exon structure




16049751161 49751189 - PIR31735
Exon structure




16149838624 49838655 + GC02P049838