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  Chromosome 17

   GeneLoc map region (46,260,650 - 50,279,000 bp) around gene/marker "COL1A1"

   Explanation:
   COL1A1 is located at 48,260,650-48,279,000 bp

    [ GeneLoc Home Page ]


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#
Start
(bp)
End
(bp)
Strand
Gene
Unigene cluster
Entrez Gene Id
Ensembl Id
Description
146263300 46281891 + ENSG00000263787
Exon structure


ENSG00000263787
246274042 46274148 - RNU6-1152P
Exon structure

hugo2121 ENSG00000207306 RNA, U6 small nuclear 1152, pseudogene
346274041 46274148 - GC17M046277



446288425 46289148 - LSM3P1
Exon structure

100303748
LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 1
546210802 46507637 - SKAP1
Exon structure
Hs.316931 8631 ENSG00000141293 src kinase associated phosphoprotein 1
646371709 46386124 + ENSG00000235300
Exon structure


ENSG00000235300
746426692 46426927 + GC17P046430



846454624 46457732 - ENSG00000266222
Exon structure


ENSG00000266222
946459734 46459948 - ENSG00000200538
Exon structure


ENSG00000200538
1046459733 46459948 - GC17M046461



1146522194 46543396 + GC17P046527



1246537732 46543402 + ENSG00000264451
Exon structure


ENSG00000264451
1346556458 46556558 + GC17P046558



1446556459 46556560 + ENSG00000206805
Exon structure


ENSG00000206805
1546605888 46608359 - HOXB1
Exon structure
Hs.99992 3211 ENSG00000120094 homeobox B1
1646618256 46623441 - HOXB2
Exon structure
Hs.514289 3212 ENSG00000173917 homeobox B2
1746620894 46621074 - GC17M046625



1846620913 46628610 + HOXB-AS1
Exon structure
Hs.171806 100874362 ENSG00000230148 HOXB cluster antisense RNA 1
1946628349 46628377 - PIR58910
Exon structure




2046562522 46699890 - GC17M046564



2146634624 46637695 + HOXB-AS2
Exon structure

100874350 ENSG00000239552 HOXB cluster antisense RNA 2
2246650831 46650858 + PIR34300
Exon structure




2346652511 46652540 + PIR47329
Exon structure




2446653131 46653162 - PIR40370
Exon structure




2546653715 46653744 + PIR53857
Exon structure




2646626232 46682274 - HOXB3
Exon structure
Hs.654560 3213 ENSG00000120093 homeobox B3
2746652869 46657473 - HOXB4
Exon structure
Hs.664706 3214 ENSG00000182742 homeobox B4
2846626992 46683776 + HOXB-AS3
Exon structure
Hs.660088 404266 ENSG00000233101 HOXB cluster antisense RNA 3
2946656707 46656737 - PIR49303
Exon structure




3046656707 46656737 - GC17M046667



3146657200 46657309 - MIR10A
Exon structure

406902 ENSG00000257178 microRNA 10a
3246657220 46657295 - GC17M046664



3346661143 46661172 - PIR56911
Exon structure




3446661156 46661183 + PIR40529
Exon structure




3546662875 46663444 + GC17P046665



3646663372 46663401 + PIR32705
Exon structure




3746666075 46666105 + PIR49991
Exon structure




3846668619 46671323 - HOXB5
Exon structure
Hs.654456 3215 ENSG00000120075 homeobox B5
3946671210 46671290 - PIR40384
Exon structure




4046673179 46673209 - PIR58858
Exon structure




4146673763 46673789 + PIR55455
Exon structure




4246667822 46683774 + GC17P046671



4346671639 46682354 - HOXB6
Exon structure
Hs.98428 3216 ENSG00000108511 homeobox B6
4446690159 46690188 + PIR62254
Exon structure




4546688739 46692478 - HOXB8
Exon structure
Hs.514292 3218 ENSG00000120068 homeobox B8
4646693134 46693161 + PIR55100
Exon structure




4746699807 46699833 + PIR56021
Exon structure




4846698518 46703839 - HOXB9
Exon structure
Hs.463350 3219 ENSG00000170689 homeobox B9
4946701752 46701780 + PIR60728
Exon structure




5046684594 46724385 - HOXB7
Exon structure
Hs.436181 3217 ENSG00000260027 homeobox B7
5146706037 46712294 + HOXB-AS4
Exon structure

100874351 ENSG00000242207 HOXB cluster antisense RNA 4
5246709852 46709921 - MIR196A1
Exon structure

406972 ENSG00000210741 microRNA 196a-1
5346767843 46767986 - ENSG00000244559
Exon structure


ENSG00000244559
5446768379 46769080 - RPL9P28
Exon structure

729146 ENSG00000242067 ribosomal protein L9 pseudogene 28
5546760729 46781844 + ENSG00000262745
Exon structure


ENSG00000262745
5646777977 46781655 + GC17P046778



5746782564 46784708 + GC17P046785



5846782565 46784722 + LOC100506373
Exon structure
Hs.599877 100506373 ENSG00000244649 Uncharacterized LOC100506373 (est)
5946791009 46791321 + COX6B1P2
Exon structure

1342 ENSG00000241788 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 2
6046799081 46799884 - PRAC1
Exon structure
Hs.116467 84366 ENSG00000159182 prostate cancer susceptibility candidate 1
6146800541 46802119 + GC17P046807



6246800530 46802819 + PRAC2
Exon structure
Hs.236557 360205 ENSG00000229637 prostate cancer susceptibility candidate 2
6346801770 46801837 - MIR3185
Exon structure

100422978 ENSG00000263602 microRNA 3185
6446802125 46806540 - HOXB13
Exon structure
Hs.66731 10481 ENSG00000159184 homeobox B13
6546810453 46811250 + ENSG00000242407
Exon structure


ENSG00000242407
6646842918 46843209 - RN7SL125P
Exon structure

hugo766 ENSG00000244514 RNA, 7SL, cytoplasmic 125, pseudogene
6746839593 46894576 - TTLL6
Exon structure
Hs.91930 284076 ENSG00000170703 tubulin tyrosine ligase-like family, member 6
6846908350 46943884 + CALCOCO2
Exon structure
Hs.514920 10241 ENSG00000136436 calcium binding and coiled-coil domain 2
6946933164 46933632 + GC17P046937



7046958201 46958329 + GC17P046963



7146958202 46958329 + ENSG00000212565
Exon structure


ENSG00000212565
7246958484 46958678 + ENSG00000248895
Exon structure


ENSG00000248895
7346952222 46986345 - LOC100128010
Exon structure

100128010 ENSG00000248278
7446970127 46973233 + ATP5G1
Exon structure
Hs.80986 516 ENSG00000159199 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
7546976493 46977110 + LOC100419622
Exon structure

100419622 ENSG00000270781
7646985731 47006422 + UBE2Z
Exon structure
Hs.514297 65264 ENSG00000159202 ubiquitin-conjugating enzyme E2Z
7747004915 47004945 + PIR52488
Exon structure




7847008741 47010411 + GC17P047012



7947009153 47014462 + ENSG00000230532
Exon structure


ENSG00000230532
8047006678 47022479 - SNF8
Exon structure
Hs.127249 11267 ENSG00000159210 SNF8, ESCRT-II complex subunit
8147026722 47026882 - GC17M047031



8247026723 47026882 - RNU1-42P
Exon structure

hugo1731 ENSG00000200903 RNA, U1 small nuclear 42, pseudogene
8347034012 47034115 - ENSG00000238804
Exon structure


ENSG00000238804
8447035916 47045958 - GIP
Exon structure
Hs.1454 2695 ENSG00000159224 gastric inhibitory polypeptide
8547072628 47074854 - ENSG00000250838
Exon structure


ENSG00000250838
8647082093 47089888 - ENSG00000270126
Exon structure


ENSG00000270126
8747090299 47091087 - ENSG00000251461
Exon structure


ENSG00000251461
8847074774 47133507 + IGF2BP1
Exon structure
Hs.144936 10642 ENSG00000159217 insulin-like growth factor 2 mRNA binding protein 1
8947113713 47113817 + GC17P047117



9047113714 47113817 + RNU6-826P
Exon structure

hugo3055 ENSG00000252636 RNA, U6 small nuclear 826, pseudogene
9147114484 47114791 + ENSG00000251550
Exon structure


ENSG00000251550
9247126902 47126986 + ENSG00000264552
Exon structure


ENSG00000264552
9347129176 47132517 + GC17P047131



9447162873 47164064 + ENSG00000248883
Exon structure


ENSG00000248883
9547187124 47187413 + ENSG00000271770
Exon structure


ENSG00000271770
9647225701 47226473 - RPS10P25
Exon structure

100271546 ENSG00000240995 ribosomal protein S10 pseudogene 25
9747209822 47247351 + B4GALNT2
Exon structure
Hs.374679 124872 ENSG00000167080 beta-1,4-N-acetyl-galactosaminyl transferase 2
9847237936 47243610 + GC17P047241



9947237937 47243610 + GC17P047242



10047249257 47250608 + ENSG00000262973
Exon structure


ENSG00000262973
10147269890 47269961 + TRNAQ2
Exon structure

7229
transfer RNA glutamine 2 (anticodon UUG)
10247280153 47287936 - GNGT2
Exon structure
Hs.181781 2793 ENSG00000167083 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
10347287589 47300587 + ABI3
Exon structure
Hs.130719 51225 ENSG00000108798 ABI family, member 3
10447301805 47301831 - PIR31803
Exon structure




10547300724 47308128 - PHOSPHO1
Exon structure
Hs.405607 162466 ENSG00000173868 phosphatase, orphan 1
10647325601 47336027 + FLJ40194
Exon structure
Hs.446890 124871 ENSG00000177369 Uncharacterized FLJ40194 (est)
10747367415 47367441 - PIR52709
Exon structure




10847368041 47368072 - PIR50566
Exon structure




10947368181 47368211 - PIR39420
Exon structure




11047366568 47439835 - ZNF652
Exon structure
Hs.712948; Hs.463375 22834 ENSG00000198740 zinc finger protein 652
11147403201 47403251 - GC17M047406



11247403202 47403263 - RNU7-135P
Exon structure

hugo3313 ENSG00000251964 RNA, U7 small nuclear 135 pseudogene
11347437971 47437998 - PIR41840
Exon structure




11447438527 47447360 + ENSG00000248714
Exon structure


ENSG00000248714
11547452742 47457456 + ENSG00000250948
Exon structure


ENSG00000250948
11647477791 47478162 - RPL21P124
Exon structure

100271450 ENSG00000186244 ribosomal protein L21 pseudogene 124
11747481443 47482559 + ENSG00000250186
Exon structure


ENSG00000250186
11847481414 47492246 - PHB
Exon structure
Hs.514303 5245 ENSG00000167085 prohibitin
11947494106 47494212 - ENSG00000207127
Exon structure


ENSG00000207127
12047494107 47494212 - GC17M047496



12147448102 47554350 + ENSG00000262039
Exon structure


ENSG00000262039
12247500652 47502298 - EIF4EP2
Exon structure

100131693 ENSG00000229944 eukaryotic translation initiation factor 4E pseudogene 2
12347515813 47515931 + GC17P047517



12447529798 47529911 + GC17P047531



12547535223 47539111 - ENSG00000249497
Exon structure


ENSG00000249497
12647572655 47592382 + NGFR
Exon structure
Hs.415768; Hs.681726 4804 ENSG00000064300 nerve growth factor receptor
12747583019 47651426 - LOC100288866
Exon structure
Hs.720309 100288866 ENSG00000249906 Uncharacterized LOC100288866 (est)
12847638364 47638447 - ENSG00000252789
Exon structure


ENSG00000252789
12947622209 47655324 - ENSG00000250310
Exon structure


ENSG00000250310
13047653220 47661189 + NXPH3
Exon structure
Hs.55069 11248 ENSG00000182575 neurexophilin 3
13147673721 47673831 + GC17P047677



13247714102 47714240 + GC17P047716



13347676246 47755596 - SPOP
Exon structure
Hs.740407 8405 ENSG00000121067 speckle-type POZ protein
13447778305 47786376 - SLC35B1
Exon structure
Hs.154073 10237 ENSG00000121073 solute carrier family 35, member B1
13547784327 47784353 - PIR42611
Exon structure




13647785696 47797422 + ENSG00000250751
Exon structure


ENSG00000250751
13747787687 47866542 - FAM117A
Exon structure
Hs.514308 81558 ENSG00000121104 family with sequence similarity 117, member A
13847838590 47838743 + GC17P047840



13947845870 47846067 + GC17P047847



14047872705 47873031 + ENSG00000235183
Exon structure


ENSG00000235183
14147865917 47906458 + KAT7
Exon structure
Hs.21907 11143 ENSG00000136504 K(lysine) acetyltransferase 7
14247905116 47905142 + PIR40833
Exon structure




14347911601 47913816 + ENSG00000262837
Exon structure


ENSG00000262837
14447915671 47925379 - TAC4
Exon structure
Hs.652130 255061 ENSG00000176358 tachykinin 4 (hemokinin)
14547923272 47926199 + FLJ45513
Exon structure
Hs.434138 729220 ENSG00000204584 Uncharacterized LOC729220 (est)
14647937887 47938053 + GC17P047939



14747964961 47978257 + ENSG00000248954
Exon structure


ENSG00000248954
14847991767 48010282 + ENSG00000254039
Exon structure


ENSG00000254039
14948016486 48017185 + LOC124865
Exon structure

124865 ENSG00000249176
15048043438 48043540 - GC17M048046



15148043439 48043540 - RNU6-1313P
Exon structure

hugo2300 ENSG00000199492 RNA, U6 small nuclear 1313, pseudogene
15248046334 48052323 + DLX4
Exon structure
Hs.591167 1748 ENSG00000108813 distal-less homeobox 4
15348049327 48050131 + GC17P048058



15448049327 48051117 + GC17P048056



15548049678 48051117 + GC17P048057



15648067369 48072588 - DLX3
Exon structure
Hs.134194 1747 ENSG00000064195 distal-less homeobox 3
15748074253 48094208 + ENSG00000248172
Exon structure


ENSG00000248172
15848127712 48133103 - GC17M048130



15948127713 48133103 - LOC284080
Exon structure
Hs.274864 284080 ENSG00000246640 Uncharacterized LOC284080 (est)
16048133332 48167849 + ITGA3
Exon structure
Hs.265829 3675 ENSG00000005884 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
16148178068 48179284 - ENSG00000250282
Exon structure


ENSG00000250282
16248172101 48189516 + PDK2
Exon structure
Hs.256667 5164 ENSG00000005882 pyruvate dehydrogenase kinase, isozyme 2
16348191383 48191410 - PIR47973
Exon structure




16448187404 48207246 - SAMD14
Exon structure
Hs.567769 201191 ENSG00000167100 sterile alpha motif domain containing 14
16548212951 48223541 + ENSG00000236472
Exon structure


ENSG00000236472
16648211101 48227991 - PPP1R9B
Exon structure
Hs.514323 84687 ENSG00000108819 protein phosphatase 1, regulatory subunit 9B
16748235694 48238637 - ENSG00000253730
Exon structure


ENSG00000253730
16848240884 48242677 - ENSG00000261959
Exon structure


ENSG00000261959
16948241575 48253293 + SGCA
Exon structure
Hs.463412 6442 ENSG00000108823 sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)
17048248788 48249837 - GC17M048251



17148248789 48258539 - HILS1
Exon structure
Hs.25934 373861 ENSG00000188662 histone linker H1 domain, spermatid-specific 1, pseudogene
17248262767 48262901 - GC17M048294



17348262767 48262901 - GC17M048287



17448266102 48266156 - GC17M048295



17548265980 48266314 - GC17M048288



17648266129 48266573 - GC17M048291



17748260650 48279000 - COL1A1
Exon structure
Hs.681002; Hs.172928 1277 ENSG00000108821 collagen, type I, alpha 1
17848273844 48273872 - PIR51177
Exon structure




17948273844 48273872 - GC17M048297



18048286333 48291820 + ENSG00000249406
Exon structure


ENSG00000249406
18148290294 48292718 - ENSG00000263176
Exon structure


ENSG00000263176
18248292055 48292781 + ENSG00000251085
Exon structure


ENSG00000251085
18348292521 48294117 - GC17M048296



18448294479 48331947 + GC17P048296



18548313206 48313490 + SUMO2P7
Exon structure

100131823 ENSG00000249838 SUMO2 pseudogene 7
18648322257 48322365 - ENSG00000239135
Exon structure


ENSG00000239135
18748348767 48358846 + TMEM92
Exon structure
Hs.224630 162461 ENSG00000167105 transmembrane protein 92
18848358938 48365216 - ENSG00000251179
Exon structure


ENSG00000251179
18948358937 48365239 - GC17M048359



19048425929 48425955 - PIR48275
Exon structure




19148431828 48431856 + PIR54052
Exon structure




19248423393 48440499 + XYLT2
Exon structure
Hs.463416 64132 ENSG00000015532 xylosyltransferase II
19348444088 48444118 - PIR36688
Exon structure




19448445218 48450575 - MRPL27
Exon structure
Hs.7736 51264 ENSG00000108826 mitochondrial ribosomal protein L27
19548453287 48453313 + PIR39723
Exon structure




19648450581 48458844 + EME1
Exon structure
Hs.514330 146956 ENSG00000154920 essential meiotic structure-specific endonuclease 1
19748456786 48456815 - PIR46000
Exon structure




19848459156 48459190 + PIR57618
Exon structure




19948459184 48459214 - PIR39633
Exon structure




20048459193 48459223 + PIR50642
Exon structure




20148459401 48459436 - PIR32914
Exon structure




20248459574 48459605 - PIR40139
Exon structure




20348459606 48459641 + PIR54818
Exon structure




20448459744 48459775 - PIR43278
Exon structure




20548460213 48460242 - PIR33736
Exon structure




20648460299 48460329 - PIR46075
Exon structure




20748460396 48460425 - PIR38447
Exon structure




20848460407 48460434 - PIR39856
Exon structure




20948460853 48460879 + PIR37815
Exon structure




21048463161 48463190 + PIR33129
Exon structure




21148463507 48463607 - GC17M048495



21248463506 48463607 - ENSG00000206824
Exon structure


ENSG00000206824
21348452420 48474914 - LRRC59
Exon structure
Hs.370927 55379 ENSG00000108829 leucine rich repeat containing 59
21448470121 48470149 - PIR37246
Exon structure




21548473799 48475249 + ENSG00000253102
Exon structure


ENSG00000253102
21648527540 48528096 - MRPS21P9
Exon structure

359772 ENSG00000262759 mitochondrial ribosomal protein S21 pseudogene 9
21748503519 48552206 + ACSF2
Exon structure
Hs.288959 80221 ENSG00000167107 acyl-CoA synthetase family member 2
21848541853 48546327 - CHAD
Exon structure
Hs.97220 1101 ENSG00000136457 chondroadherin
21948557073 48557101 + PIR52344
Exon structure




22048556161 48563336 + RSAD1
Exon structure
Hs.8033 55316 ENSG00000136444 radical S-adenosyl methionine domain containing 1
22148580537 48580564 + PIR42018
Exon structure




22248580773 48585689 - ENSG00000249451
Exon structure


ENSG00000249451
22348585745 48608862 + MYCBPAP
Exon structure
Hs.398196 84073 ENSG00000136449 MYCBP associated protein
22448614655 48616115 - ENSG00000250286
Exon structure


ENSG00000250286
22548609904 48621111 + EPN3
Exon structure
Hs.670090 55040 ENSG00000049283 epsin 3
22648620419 48633213 + SPATA20
Exon structure
Hs.103147 64847 ENSG00000006282 spermatogenesis associated 20
22748629463 48629489 + PIR57018
Exon structure




22848633568 48639469 - CACNA1G-AS1
Exon structure
Hs.558704 253962 ENSG00000250107 CACNA1G antisense RNA 1
22948640564 48641144 - ENSG00000250976
Exon structure


ENSG00000250976
23048638429 48704835 + CACNA1G
Exon structure
Hs.591169 8913 ENSG00000006283 calcium channel, voltage-dependent, T type, alpha 1G subunit
23148704393 48709301 - ENSG00000251239
Exon structure


ENSG00000251239
23248712138 48769613 + ABCC3
Exon structure
Hs.463421 8714 ENSG00000108846 ATP-binding cassette, sub-family C (CFTR/MRP), member 3
23348770809 48772810 + ENSG00000262967
Exon structure


ENSG00000262967
23448774004 48774119 + GC17P048776



23548774005 48774121 + ENSG00000201340
Exon structure


ENSG00000201340
23648770551 48785285 - ANKRD40
Exon structure
Hs.463426 91369 ENSG00000154945 ankyrin repeat domain 40
23748796905 48833574 + LUC7L3
Exon structure
Hs.130293 51747 ENSG00000108848 LUC7-like 3 (S. cerevisiae)
23848821106 48823219 + GC17P048825



23948821107 48823219 + GC17P048827



24048830416 48833574 + GC17P048832



24148834760 48844918 - GC17M048836



24248834759 48844918 - LINC00483
Exon structure
Hs.389460 55018 ENSG00000167117 long intergenic non-protein coding RNA 483
24348870666 48872202 + GC17P048872



24448874727 48875012 - ENSG00000248702
Exon structure


ENSG00000248702
24548912011 48919709 + WFIKKN2
Exon structure
Hs.211475 124857 ENSG00000173714 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
24648917418 48918987 - ENSG00000261976
Exon structure


ENSG00000261976
24748925295 48927014 + RPL5P33
Exon structure

100130929 ENSG00000243521 ribosomal protein L5 pseudogene 33
24848939584 48945339 - TOB1
Exon structure
Hs.744946; Hs.703321 10140 ENSG00000141232 transducer of ERBB2, 1
24948944040 48987098 + TOB1-AS1
Exon structure
Hs.641441 400604 ENSG00000229980 TOB1 antisense RNA 1
25048986998 48987593 - ENSG00000262006
Exon structure


ENSG00000262006
25149012350 49022074 - ENSG00000247011
Exon structure


ENSG00000247011
25249012352 49022074 - GC17M049014



25349021465 49026111 + ENSG00000251665
Exon structure


ENSG00000251665
25449039535 49198226 - SPAG9
Exon structure
Hs.463439 9043 ENSG00000008294 sperm associated antigen 9
25549119885 49162832 + ENSG00000249870
Exon structure


ENSG00000249870
25649175535 49175639 - ENSG00000238815
Exon structure


ENSG00000238815
25749230897 49239789 + NME1
Exon structure

4830 ENSG00000239672 NME/NM23 nucleoside diphosphate kinase 1
25849230896 49249105 + GC17P049232



25949230897 49249108 + NME1-NME2
Exon structure

654364 ENSG00000243678 NME1-NME2 readthrough
26049230951 49249105 + NME2
Exon structure
Hs.463456 4831 ENSG00000011052 NME/NM23 nucleoside diphosphate kinase 2
26149243769 49244197 + GC17P049246



26249254786 49337524 - MBTD1
Exon structure
Hs.656803 54799 ENSG00000011258 mbt domain containing 1
26349326940 49329109 - ENSG00000264895
Exon structure


ENSG00000264895
26449337889 49375297 + UTP18
Exon structure
Hs.709327 51096 ENSG00000011260 UTP18 small subunit (SSU) processome component homolog (yeast)
26549389970 49412526 - ENSG00000249383
Exon structure


ENSG00000249383
26649410040 49411451 + ENSG00000249982
Exon structure


ENSG00000249982
26749412622 49413601 + ENSG00000249658
Exon structure


ENSG00000249658
26849414076 49419932 + FLJ42842
Exon structure
Hs.626751 440446 ENSG00000225860 Uncharacterized FLJ42842 (est)
26949512788 49523163 + ENSG00000267452
Exon structure


ENSG00000267452
27049577672 49577819 + GC17P049579



27149579783 49580614 - RPL7P48
Exon structure

388401 ENSG00000187504 ribosomal protein L7 pseudogene 48
27249672867 49673118 - RN7SL699P
Exon structure

hugo1392 ENSG00000265171 RNA, 7SL, cytoplasmic 699, pseudogene
27349707674 50237377 - CA10
Exon structure
Hs.463466 56934 ENSG00000154975 carbonic anhydrase X