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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 16

   GeneLoc map region (54,899,119 - 58,949,762 bp) around gene/marker "SLC12A3"

   Explanation:
   SLC12A3 is located at 56,899,119-56,949,762 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
154923451 54927395 - GC16M054926



254951851 54963553 - GC16M054951



354952775 54963101 - CRNDE
Exon structure
Hs.237396 643911 ENSG00000245694 colorectal neoplasia differentially expressed (non-protein coding)
454964774 54968397 + IRX5
Exon structure
Hs.435730 10265 ENSG00000176842 iroquois homeobox 5
554966590 54966654 - GC16M054966



654966408 54967100 + GC16P054973



754971698 54972583 - ENSG00000259725
Exon structure


ENSG00000259725
854968825 54988577 + ENSG00000259711
Exon structure


ENSG00000259711
954997222 54997361 + GC16P055000



1055041894 55042218 + ENSG00000260147
Exon structure


ENSG00000260147
1155120422 55120453 + GC16P055120



1255263083 55263114 - GC16M055263



1355325293 55325587 - RN7SL841P
Exon structure

hugo1657 ENSG00000239555 RNA, 7SL, cytoplasmic 841, pseudogene
1455293881 55367500 - ENSG00000259283
Exon structure


ENSG00000259283
1555357672 55364672 + IRX6
Exon structure
Hs.369907 79190 ENSG00000159387 iroquois homeobox 6
1655366267 55366879 + ENSG00000263207
Exon structure


ENSG00000263207
1755386633 55387000 - RPL31P56
Exon structure

100271478 ENSG00000240760 ribosomal protein L31 pseudogene 56
1855400657 55403877 - GC16M055401



1955423570 55461681 + GC16P055425



2055462953 55463180 + GC16P055466



2155461470 55496209 - ENSG00000260135
Exon structure


ENSG00000260135
2255423612 55540603 + MMP2
Exon structure
Hs.513617 4313 ENSG00000087245 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)
2355513091 55513491 + GC16P055520



2455513091 55513491 + GC16P055521



2555522514 55523634 + GC16P055526



2655542984 55559970 + GC16P055543



2755572112 55575939 + ENSG00000261997
Exon structure


ENSG00000261997
2855542910 55620582 + LPCAT2
Exon structure
Hs.460857 54947 ENSG00000087253 lysophosphatidylcholine acyltransferase 2
2955600584 55601599 + CAPNS2
Exon structure
Hs.660027 84290 ENSG00000256812 calpain, small subunit 2
3055689516 55740104 + SLC6A2
Exon structure
Hs.78036 6530 ENSG00000103546 solute carrier family 6 (neurotransmitter transporter), member 2
3155758837 55784123 + CES1P2
Exon structure
Hs.554599 390732 ENSG00000260765 carboxylesterase 1 pseudogene 2
3255794410 55798640 + GC16P055799



3355794460 55828070 + CES1P1
Exon structure
Hs.721645 51716 ENSG00000228695 carboxylesterase 1 pseudogene 1
3455836763 55867249 - CES1
Exon structure
Hs.558865 1066 ENSG00000198848 carboxylesterase 1
3555880066 55989943 - CES5A
Exon structure
Hs.350800 221223 ENSG00000159398 carboxylesterase 5A
3656073890 56111327 - GC16M056073



3756143449 56170912 + ENSG00000260041
Exon structure


ENSG00000260041
3856126899 56225006 - RP11-461O7.1
Exon structure
Hs.707433 283856 ENSG00000246379 Uncharacterized LOC283856 (est)
3956217638 56220218 - LOC101927508
Exon structure

101927508 ENSG00000261013
4056226526 56228437 - DKFZP434H168
Exon structure
Hs.721567 26077 ENSG00000261439 Uncharacterized LOC26077 (est)
4156225887 56247319 + GC16P056230



4256225369 56309883 + GC16P056229



4356279432 56279535 + MIR3935
Exon structure

100500891 ENSG00000265281 microRNA 3935
4456225251 56391356 + GNAO1
Exon structure
Hs.644524 2775 ENSG00000087258 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O
4556309943 56309972 + PIR47916
Exon structure




4656334528 56336816 + ENSG00000260198
Exon structure


ENSG00000260198
4756374756 56377888 + GC16P056384



4856374758 56377888 + GC16P056389



4956378697 56378725 + PIR38889
Exon structure




5056370658 56389033 + GC16P056370



5156380245 56380273 + PIR60657
Exon structure




5256385798 56387436 - ENSG00000272372
Exon structure


ENSG00000272372
5356395914 56397757 - GC16M056396



5456395364 56459450 - AMFR
Exon structure
Hs.295137 267 ENSG00000159461 autocrine motility factor receptor, E3 ubiquitin protein ligase
5556419554 56435687 - GC16M056419



5656435689 56435716 - PIR40925
Exon structure




5756443406 56443439 - PIR40367
Exon structure




5856443232 56445595 + ENSG00000260621
Exon structure


ENSG00000260621
5956448233 56458107 - GC16M056448



6056457933 56457965 - GC16M056460



6156457933 56457965 - PIR43832
Exon structure




6256458512 56458540 - PIR36581
Exon structure




6356468239 56469124 - GC16M056468



6456473039 56473647 - GC16M056473



6556463045 56486111 - NUDT21
Exon structure
Hs.528834 11051 ENSG00000167005 nudix (nucleoside diphosphate linked moiety X)-type motif 21
6656492041 56500091 + GC16P056492



6756485402 56513012 + OGFOD1
Exon structure
Hs.231883 55239 ENSG00000087263 2-oxoglutarate and iron-dependent oxygenase domain containing 1
6856500748 56554195 - BBS2
Exon structure
Hs.333738 583 ENSG00000125124 Bardet-Biedl syndrome 2
6956532402 56533835 - GC16M056532



7056536134 56543879 - GC16M056536



7156598961 56602869 + MT4
Exon structure
Hs.567624 84560 ENSG00000102891 metallothionein 4
7256607251 56607270 + GC16P056614



7356608324 56608374 + GC16P056615



7456622986 56625000 + MT3
Exon structure
Hs.73133 4504 ENSG00000087250 metallothionein 3
7556642495 56642573 + GC16P056648



7656642495 56642573 + GC16P056649



7756642111 56643409 + MT2A
Exon structure
Hs.534330 4502 ENSG00000125148 metallothionein 2A
7856643413 56645287 - ENSG00000260823
Exon structure


ENSG00000260823
7956651373 56652730 + MT1L
Exon structure
Hs.647358 4500 ENSG00000260549 metallothionein 1L (gene/pseudogene)
8056659763 56660442 + GC16P056664



8156659387 56661024 + MT1E
Exon structure
Hs.744893 4493 ENSG00000169715 metallothionein 1E
8256662971 56666150 - ENSG00000268317
Exon structure


ENSG00000268317
8356666145 56667898 + MT1M
Exon structure
Hs.647370 4499 ENSG00000205364 metallothionein 1M
8456669651 56670998 + MT1JP
Exon structure
Hs.736648 4498 ENSG00000255986 metallothionein 1J, pseudogene
8556672578 56673999 + MT1A
Exon structure
Hs.655199 4489 ENSG00000205362 metallothionein 1A
8656677599 56678853 + MT1DP
Exon structure
Hs.679600 326343 ENSG00000205361 metallothionein 1D, pseudogene
8756681601 56683426 + MT1CP
Exon structure

441771 ENSG00000205360 metallothionein 1C, pseudogene
8856682793 56686548 + ENSG00000259923
Exon structure


ENSG00000259923
8956685811 56687116 + MT1B
Exon structure
Hs.656629 4490 ENSG00000169688 metallothionein 1B
9056691606 56694610 + MT1F
Exon structure
Hs.513626 4494 ENSG00000198417 metallothionein 1F
9156700643 56701977 - MT1G
Exon structure
Hs.433391 4495 ENSG00000125144 metallothionein 1G
9256701224 56701905 - GC16M056710



9356701224 56701905 - GC16M056711



9456703796 56704482 + GC16P056708



9556703726 56705041 + MT1H
Exon structure
Hs.438462 4496 ENSG00000205358 metallothionein 1H
9656709649 56711653 + MT1IP
Exon structure
Hs.434199; Hs.742627 644314
metallothionein 1I, pseudogene
9756710043 56711676 + GC16P056726



9856716452 56717141 + GC16P056724



9956716336 56718108 + MT1X
Exon structure
Hs.374950 4501 ENSG00000187193 metallothionein 1X
10056716382 56721719 + ENSG00000259827
Exon structure


ENSG00000259827
10156720754 56722210 + DPPA2P4
Exon structure

100131777 ENSG00000261429 developmental pluripotency associated 2 pseudogene 4
10256737099 56743156 + GC16P056737



10356727821 56763941 - GC16M056727



10456742684 56763880 - ENSG00000261302
Exon structure


ENSG00000261302
10556774457 56774488 - GC16M056774



10656774498 56774527 - GC16M056775



10756774858 56774890 + GC16P056774



10856764017 56878862 + NUP93
Exon structure
Hs.276878 9688 ENSG00000102900 nucleoporin 93kDa
10956815741 56855454 + GC16P056816



11056875553 56880792 + GC16P056875



11156892429 56892513 + GC16P056895



11256892430 56892513 + MIR138-2
Exon structure

406930 ENSG00000207649 microRNA 138-2
11356897930 56898057 + GC16P056903



11456899119 56949762 + SLC12A3
Exon structure
Hs.669115 6559 ENSG00000070915 solute carrier family 12 (sodium/chloride transporter), member 3
11556940410 56940935 + RPS24P17
Exon structure

100216341 ENSG00000243988 ribosomal protein S24 pseudogene 17
11656940938 56947890 + GC16P056943



11756966054 56969475 + GC16P056966



11856965748 56977798 + HERPUD1
Exon structure
Hs.146393 9709 ENSG00000051108 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
11956974190 56975254 + ENSG00000261270
Exon structure


ENSG00000261270
12056974940 56975638 + ENSG00000261114
Exon structure


ENSG00000261114
12156975923 56977319 + GC16P056976



12256991177 56991273 + ENSG00000263441
Exon structure


ENSG00000263441
12356995762 57017757 + CETP
Exon structure
Hs.89538 1071 ENSG00000087237 cholesteryl ester transfer protein, plasma
12457023475 57026356 + GC16P057024



12557046983 57048012 - LOC100130044
Exon structure

100130044 ENSG00000259922
12657023397 57117443 + NLRC5
Exon structure
Hs.528836 84166 ENSG00000140853 NLR family, CARD domain containing 5
12757075400 57077720 + GC16P057075



12857079209 57088948 + GC16P057079



12957086417 57092409 - ENSG00000260145
Exon structure


ENSG00000260145
13057093095 57095916 + GC16P057093



13157108083 57110763 + GC16P057108



13257125125 57126215 - ENSG00000260148
Exon structure


ENSG00000260148
13357126449 57181878 + CPNE2
Exon structure
Hs.339809 221184 ENSG00000140848 copine II
13457186378 57220028 - FAM192A
Exon structure
Hs.396740 80011 ENSG00000172775 family with sequence similarity 192, member A
13557212426 57219874 - GC16M057212



13657220223 57239181 + GC16P057221



13757235201 57235230 - GC16M057236



13857235351 57235383 - GC16M057235



13957235430 57235459 - GC16M057241



14057235802 57235834 + GC16P057235



14157220049 57274387 + RSPRY1
Exon structure
Hs.460885 89970 ENSG00000159579 ring finger and SPRY domain containing 1
14257241962 57254736 + GC16P057241



14357258334 57272958 + GC16P057258



14457281262 57282404 + ENSG00000260038
Exon structure


ENSG00000260038
14557279038 57287185 + GC16P057283



14657279010 57287545 + ARL2BP
Exon structure
Hs.719024 23568 ENSG00000102931 ADP-ribosylation factor-like 2 binding protein
14757282459 57286664 - ENSG00000260946
Exon structure


ENSG00000260946
14857290004 57318599 - PLLP
Exon structure
Hs.632215 51090 ENSG00000102934 plasmolipin
14957333863 57333945 + TRNAL13
Exon structure

100189130
transfer RNA leucine 13 (anticodon CAG)
15057334392 57334474 - TRNAL11
Exon structure

100189089
transfer RNA leucine 11 (anticodon CAG)
15157355264 57356029 + ENSG00000260965
Exon structure


ENSG00000260965
15257366291 57366511 - ENSG00000271456
Exon structure


ENSG00000271456
15357392684 57400102 + CCL22
Exon structure
Hs.534347 6367 ENSG00000102962 chemokine (C-C motif) ligand 22
15457402513 57402996 + GC16P057402



15557406370 57418960 + CX3CL1
Exon structure
Hs.531668 6376 ENSG00000006210 chemokine (C-X3-C motif) ligand 1
15657438679 57449974 + CCL17
Exon structure
Hs.546294 6361 ENSG00000102970 chemokine (C-C motif) ligand 17
15757463089 57464558 - GC16M057463



15857467560 57473125 - GC16M057467



15957462081 57481440 - CIAPIN1
Exon structure
Hs.4900 57019 ENSG00000005194 cytokine induced apoptosis inhibitor 1
16057481337 57495187 + COQ9
Exon structure
Hs.513632 57017 ENSG00000088682 coenzyme Q9
16157494967 57496649 + ENSG00000260345
Exon structure


ENSG00000260345
16257496689 57497424 + GC16P057497



16357500102 57500128 + PIR63065
Exon structure




16457496299 57505922 + POLR2C
Exon structure
Hs.79402 5432 ENSG00000102978 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
16557509426 57510222 - GC16M057509



16657505863 57521239 - DOK4
Exon structure
Hs.279832 55715 ENSG00000125170 docking protein 4
16757546090 57570511 - CCDC102A
Exon structure
Hs.644611 92922 ENSG00000135736 coiled-coil domain containing 102A
16857568710 57568736 + PIR39147
Exon structure




16957576566 57596513 + GC16P057577



17057600534 57600639 + GC16P057603



17157576333 57625593 + GPR114
Exon structure
Hs.187884 221188 ENSG00000159618 G protein-coupled receptor 114
17257599222 57641009 - GC16M057599



17357637010 57639448 + HMGB3P32
Exon structure

100507549 ENSG00000260828 high mobility group box 3 pseudogene 32
17457655946 57665559 - ENSG00000261633
Exon structure


ENSG00000261633
17557653650 57687956 + GC16P057654



17657644564 57698944 + GPR56
Exon structure
Hs.513633 9289 ENSG00000205336 G protein-coupled receptor 56
17757702235 57712538 + GC16P057703



17857702099 57723975 + GPR97
Exon structure
Hs.383403 222487 ENSG00000182885 G protein-coupled receptor 97
17957715036 57735642 - ENSG00000260467
Exon structure


ENSG00000260467
18057728705 57765717 + CCDC135
Exon structure
Hs.513635 84229 ENSG00000159625 coiled-coil domain containing 135
18157747694 57748869 + LOC100421594
Exon structure

100421594 ENSG00000260438
18257758372 57758400 + PIR59892
Exon structure




18357769642 57791162 + KATNB1
Exon structure
Hs.275675 10300 ENSG00000140854 katanin p80 (WD repeat containing) subunit B 1
18457789058 57790807 + GC16P057789



18557793350 57795173 - GC16M057793



18657805547 57813452 - GC16M057812



18757805472 57837207 - GC16M057811



18857832098 57850850 + LOC388282
Exon structure
Hs.434720 388282 ENSG00000187185 Uncharacterized LOC388282 (est)
18957792129 57896957 - KIFC3
Exon structure
Hs.23131 3801 ENSG00000140859 kinesin family member C3
19057864440 57864546 - ENSG00000206833
Exon structure


ENSG00000206833
19157864439 57864546 - GC16M057869



19257908288 57908434 - ENSG00000265209
Exon structure


ENSG00000265209
19357916244 58005020 - CNGB1
Exon structure
Hs.147062 1258 ENSG00000070729 cyclic nucleotide gated channel beta 1
19457957017 57973453 - GC16M057958



19558010339 58022020 + TEPP
Exon structure
Hs.132976 374739 ENSG00000159648 testis, prostate and placenta expressed
19658019085 58022020 + GC16P058019



19758028572 58034357 - ZNF319
Exon structure
Hs.129268 57567 ENSG00000166188 zinc finger protein 319
19858031471 58031502 - PIR35383
Exon structure




19958031471 58031502 - GC16M058033



20058033450 58055527 + USB1
Exon structure
Hs.408702 79650 ENSG00000103005 U6 snRNA biogenesis 1
20158059282 58080805 + MMP15
Exon structure
Hs.80343 4324 ENSG00000102996 matrix metallopeptidase 15 (membrane-inserted)
20258078918 58078946 + PIR61773
Exon structure




20358116972 58117072 - ENSG00000207173
Exon structure


ENSG00000207173
20458116973 58117072 - GC16M058120



20558125020 58126894 - LOC100125393
Exon structure

100125393 ENSG00000261151
20658125957 58126851 - GC16M058126



20758148866 58149354 - GC16M058148



20858150789 58153257 + ENSG00000260545
Exon structure


ENSG00000260545
20958147496 58163354 - C16orf80
Exon structure
Hs.532755 29105 ENSG00000070761 chromosome 16 open reading frame 80
21058149696 58163272 - GC16M058149



21158163433 58193037 + ENSG00000260927
Exon structure


ENSG00000260927
21258190269 58190298 + PIR53344
Exon structure




21358194139 58194169 - PIR36831
Exon structure




21458194139 58194169 - GC16M058195



21558194857 58194884 + PIR53899
Exon structure




21658195364 58195392 + PIR46560
Exon structure




21758191811 58231824 - CSNK2A2
Exon structure
Hs.82201 1459 ENSG00000070770 casein kinase 2, alpha prime polypeptide
21858207922 58230677 - GC16M058207



21958233474 58233740 - RN7SL645P
Exon structure

hugo1441 ENSG00000240863 RNA, 7SL, cytoplasmic 645, pseudogene
22058231016 58251709 + ENSG00000260867
Exon structure


ENSG00000260867
22158265061 58317740 + CCDC113
Exon structure
Hs.11614 29070 ENSG00000103021 coiled-coil domain containing 113
22258314407 58314433 + PIR34447
Exon structure




22358315593 58316079 + ENSG00000203343
Exon structure


ENSG00000203343
22458318309 58319206 - GC16M058318



22558313901 58328951 - PRSS54
Exon structure
Hs.411239 221191 ENSG00000103023 protease, serine, 54
22658328984 58440048 + GINS3
Exon structure
Hs.47125 64785 ENSG00000181938 GINS complex subunit 3 (Psf3 homolog)
22758387050 58387082 + GC16P058387



22858411956 58412052 - ENSG00000212379
Exon structure


ENSG00000212379
22958411955 58412052 - GC16M058415



23058416893 58417702 - ENSG00000261078
Exon structure


ENSG00000261078
23158418346 58418446 - ENSG00000252271
Exon structure


ENSG00000252271
23258426602 58427577 + GC16P058427



23358431081 58431110 - GC16M058432



23458431231 58431263 - GC16M058431



23558431642 58431674 + GC16P058431



23658447332 58447661 + GC16P058447



23758455230 58496374 + ENSG00000260186
Exon structure


ENSG00000260186
23858480695 58480923 - GC16M058480



23958496750 58547532 + NDRG4
Exon structure
Hs.322430 65009 ENSG00000103034 NDRG family member 4
24058497620 58547319 + GC16P058498



24158530812 58530918 + ENSG00000200556
Exon structure


ENSG00000200556
24258541872 58541899 + PIR50383
Exon structure




24358545858 58550001 - GC16M058545



24458547897 58549382 - GC16M058547



24558549434 58550121 + GC16P058551



24658550851 58550879 + PIR59635
Exon structure




24758549383 58554431 + SETD6
Exon structure
Hs.731691 79918 ENSG00000103037 SET domain containing 6
24858562518 58564572 - GC16M058562



24958580586 58580616 - PIR40366
Exon structure




25058580586 58580616 - GC16M058587



25158582402 58582537 - GC16M058588



25258582403 58582537 - SNORA46
Exon structure
Hs.688592 677827 ENSG00000207493 small nucleolar RNA, H/ACA box 46
25358582402 58582537 - GC16M058586



25458585507 58592521 - GC16M058589



25558593699 58593835 - GC16M058596



25658593700 58593835 - SNORA50
Exon structure
Hs.677515 677830 ENSG00000206952 small nucleolar RNA, H/ACA box 50
25758553855 58663790 - CNOT1
Exon structure
Hs.460923 23019 ENSG00000125107 CCR4-NOT transcription complex, subunit 1
25858631493 58631849 - ENSG00000260865
Exon structure


ENSG00000260865
25958632914 58663751 - GC16M058633



26058652579 58652668 + ENSG00000239121
Exon structure


ENSG00000239121
26158699013 58719008 - SLC38A7
Exon structure
Hs.10499 55238 ENSG00000103042 solute carrier family 38, member 7
26258715292 58718674 - GC16M058715



26358741035 58768261 - GOT2
Exon structure
Hs.599470 2806 ENSG00000125166 glutamic-oxaloacetic transaminase 2, mitochondrial
26458762500 58762580 - RNY5P9
Exon structure

100169836
RNA, Ro-associated Y5 pseudogene 9
26558766269 58766354 - GC16M058770



26658778155 58778261 - ENSG00000200424
Exon structure


ENSG00000200424
26758778154 58778261 - GC16M058782



26858783314 58783346 - GC16M058783



26958804428 58804722 + RN7SL143P
Exon structure

hugo894 ENSG00000244003 RNA, 7SL, cytoplasmic 143, pseudogene
27058810444 58811467 + GEMIN8P2
Exon structure

644600 ENSG00000260451 gem (nuclear organelle) associated protein 8 pseudogene 2
27158820727 58820753 + PIR49981
Exon structure




27258859795 58860272 + RPL12P36
Exon structure

100271408 ENSG00000242423 ribosomal protein L12 pseudogene 36
27358877901 58878017 + GC16P058880



27458880512 58880540 - GC16M058880



27558881711 58914117 - ENSG00000261638
Exon structure


ENSG00000261638
27658767816 59142878 + ENSG00000245768
Exon structure


ENSG00000245768