GeneLoc Home GeneCards Home MalaCards Home About GeneLoc Contact Us
Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 16

   GeneLoc map region (54,865,207 - 58,915,850 bp) around gene/marker "SLC12A3"

   Explanation:
   SLC12A3 is located at 56,865,207-56,915,850 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
154853553 54893566 - LOC105371275
Exon structure

105371275

254873998 54876679 - GC16M054873



354876664 54881371 + GC16P054876



454884068 54889792 - GC16M054885



554907840 54911758 - GC16M054907



654918863 54929189 - CRNDE
Exon structure
Hs.237396 643911 ENSG00000245694 colorectal neoplasia differentially expressed (non-protein coding)
754930862 54934485 + IRX5
Exon structure
Hs.435730 10265 ENSG00000176842 iroquois homeobox 5
854937786 54938671 - ENSG00000259725
Exon structure


ENSG00000259725
954934913 54954665 + ENSG00000259711
Exon structure


ENSG00000259711
1055007982 55008306 + ENSG00000260147
Exon structure


ENSG00000260147
1155042998 55049302 - LOC105371278
Exon structure

105371278

1255086510 55086541 + GC16P055086



1355088996 55113158 + GC16P055088



1455275128 55276592 + GC16P055275



1555291379 55291675 - RN7SL841P
Exon structure

106481150 ENSG00000239555 RNA, 7SL, cytoplasmic 841, pseudogene
1655259969 55333588 - ENSG00000259283
Exon structure


ENSG00000259283
1755323760 55330760 + IRX6
Exon structure
Hs.369907 79190 ENSG00000159387 iroquois homeobox 6
1855332355 55332967 + ENSG00000263207
Exon structure


ENSG00000263207
1955352721 55353088 - RPL31P56
Exon structure

100271478 ENSG00000240760 ribosomal protein L31 pseudogene 56
2055346610 55386478 - GC16M055346



2155366723 55369570 - LOC105371279
Exon structure

105371279

2255391598 55394118 + GC16P055391



2355425574 55426130 - ENSG00000274508
Exon structure


ENSG00000274508
2455429041 55429268 + GC16P055429



2555426797 55462297 - ENSG00000260135
Exon structure


ENSG00000260135
2655389700 55506691 + MMP2
Exon structure
Hs.513617 4313 ENSG00000087245 matrix metallopeptidase 2
2755479179 55479579 + GC16P055479



2855479179 55479579 + GC16P055480



2955484472 55486871 - GC16M055484



3055486618 55488777 + ENSG00000279030
Exon structure


ENSG00000279030
3155538200 55542027 + ENSG00000261997
Exon structure


ENSG00000261997
3255508998 55586670 + LPCAT2
Exon structure
Hs.460857 54947 ENSG00000087253 lysophosphatidylcholine acyltransferase 2
3355566672 55567687 + CAPNS2
Exon structure
Hs.660027 84290 ENSG00000256812 calpain, small subunit 2
3455653124 55655652 - LOC105376770
Exon structure

105376770

3555655604 55706192 + SLC6A2
Exon structure
Hs.78036 6530 ENSG00000103546 solute carrier family 6 (neurotransmitter transporter), member 2
3655704119 55706422 + ENSG00000278928
Exon structure


ENSG00000278928
3755714266 55721836 - LOC105371280
Exon structure

105371280

3855724925 55750211 + CES1P2
Exon structure
Hs.554599 390732 ENSG00000260765 carboxylesterase 1 pseudogene 2
3955760548 55794158 + CES1P1
Exon structure
Hs.721645 51716 ENSG00000228695 carboxylesterase 1 pseudogene 1
4055802851 55833337 - CES1
Exon structure
Hs.558865 1066 ENSG00000198848 carboxylesterase 1
4155846154 55956031 - CES5A
Exon structure
Hs.350800 221223 ENSG00000159398 carboxylesterase 5A
4256108980 56109970 + ENSG00000279523
Exon structure


ENSG00000279523
4356108956 56136743 + LOC102725116
Exon structure

102725116

4456109537 56137000 + ENSG00000260041
Exon structure


ENSG00000260041
4556092987 56191094 - LOC283856
Exon structure
Hs.707433 283856 ENSG00000246379 Uncharacterized LOC283856 (est)
4656183726 56186306 - ENSG00000261013
Exon structure


ENSG00000261013
4756192614 56194525 - DKFZP434H168
Exon structure
Hs.721567 26077 ENSG00000261439 Uncharacterized LOC26077 (est)
4856200108 56200841 - GC16M056200



4956203788 56209217 - GC16M056203



5056245520 56245623 + MIR3935
Exon structure

100500891 ENSG00000265281 microRNA 3935
5156191339 56357444 + GNAO1
Exon structure
Hs.644524 2775 ENSG00000087258 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O
5256276031 56276060 + PIR47916
Exon structure




5356280231 56302904 + LOC102723466
Exon structure

102723466 ENSG00000260198
5456306845 56308335 + ENSG00000279764
Exon structure


ENSG00000279764
5556301360 56318167 - GC16M056301



5656351886 56353524 - ENSG00000272372
Exon structure


ENSG00000272372
5756362002 56363845 - GC16M056362



5856361452 56425538 - AMFR
Exon structure
Hs.295137 267 ENSG00000159461 autocrine motility factor receptor, E3 ubiquitin protein ligase
5956401777 56401804 - PIR40925
Exon structure




6056409494 56409523 - PIR52158
Exon structure




6156409320 56411683 + ENSG00000260621
Exon structure


ENSG00000260621
6256424021 56424053 - GC16M056424



6356424021 56424053 - PIR43832
Exon structure




6456424600 56424628 - PIR36581
Exon structure




6556429133 56452199 - NUDT21
Exon structure
Hs.528834 11051 ENSG00000167005 nudix (nucleoside diphosphate linked moiety X)-type motif 21
6656451417 56479100 + OGFOD1
Exon structure
Hs.231883 55239 ENSG00000087263 2-oxoglutarate and iron-dependent oxygenase domain containing 1
6756465642 56466162 - ENSG00000274031
Exon structure


ENSG00000274031
6856466836 56520283 - BBS2
Exon structure
Hs.333738 583 ENSG00000125124 Bardet-Biedl syndrome 2
6956558500 56565679 - GC16M056558



7056565049 56568957 + MT4
Exon structure
Hs.567624 84560 ENSG00000102891 metallothionein 4
7156573339 56573358 + GC16P056573



7256574401 56574462 + ENSG00000280654
Exon structure


ENSG00000280654
7356574412 56574462 + GC16P056575



7456589074 56591088 + MT3
Exon structure
Hs.73133 4504 ENSG00000087250 metallothionein 3
7556608583 56608661 + GC16P056609



7656608583 56608661 + GC16P056608



7756608199 56609497 + MT2A
Exon structure
Hs.534330 4502 ENSG00000125148 metallothionein 2A
7856609415 56611920 - LOC105371284
Exon structure

105371284 ENSG00000260823
7956617461 56618818 + MT1L
Exon structure
Hs.647358 4500 ENSG00000260549 metallothionein 1L (gene/pseudogene)
8056625475 56627112 + MT1E
Exon structure
Hs.744893 4493 ENSG00000169715 metallothionein 1E
8156632233 56633986 + MT1M
Exon structure
Hs.647370 4499 ENSG00000205364 metallothionein 1M
8256635739 56637086 + MT1JP
Exon structure
Hs.736648 4498 ENSG00000255986 metallothionein 1J, pseudogene
8356643687 56644941 + MT1DP
Exon structure
Hs.679600 326343 ENSG00000205361 metallothionein 1D, pseudogene (functional)
8456647689 56649514 + MT1CP
Exon structure

441771 ENSG00000205360 metallothionein 1C, pseudogene
8556648881 56652636 + ENSG00000259923
Exon structure


ENSG00000259923
8656651899 56653204 + MT1B
Exon structure
Hs.656629 4490 ENSG00000169688 metallothionein 1B
8756657694 56660698 + MT1F
Exon structure
Hs.513626 4494 ENSG00000198417 metallothionein 1F
8856662257 56666864 + LOC101927536
Exon structure

101927536

8956666731 56668065 - MT1G
Exon structure
Hs.433391 4495 ENSG00000125144 metallothionein 1G
9056669814 56671129 + MT1H
Exon structure
Hs.438462 4496 ENSG00000205358 metallothionein 1H
9156676116 56677877 + MT1IP
Exon structure
Hs.434199; Hs.742627 644314 ENSG00000275691 metallothionein 1I, pseudogene
9256682424 56684196 + MT1X
Exon structure
Hs.374950 4501 ENSG00000187193 metallothionein 1X
9356682470 56687807 + ENSG00000259827
Exon structure


ENSG00000259827
9456684104 56687406 - LOC105371285
Exon structure

105371285

9556686837 56688298 + DPPA2P4
Exon structure

100131777 ENSG00000261429 developmental pluripotency associated 2 pseudogene 4
9656638666 56750276 + MT1A
Exon structure
Hs.655199 4489 ENSG00000205362 metallothionein 1A
9756708829 56724575 + LOC105371287
Exon structure

105371287

9856708772 56730015 - LOC105371286
Exon structure

105371286 ENSG00000261302
9956730105 56850286 + NUP93
Exon structure
Hs.276878 9688 ENSG00000102900 nucleoporin 93kDa
10056858518 56858601 + MIR138-2
Exon structure

406930 ENSG00000207649 microRNA 138-2
10156858517 56858601 + GC16P056858



10256864018 56864145 + GC16P056865



10356864952 56865012 + ENSG00000274182
Exon structure


ENSG00000274182
10456865207 56915850 + SLC12A3
Exon structure
Hs.669115 6559 ENSG00000070915 solute carrier family 12 (sodium/chloride transporter), member 3
10556904264 56904353 + MIR6863
Exon structure

102466752
microRNA 6863
10656906498 56907023 + RPS24P17
Exon structure

100216341 ENSG00000243988 ribosomal protein S24 pseudogene 17
10756931765 56944863 + HERPUD1
Exon structure
Hs.146393 9709 ENSG00000051108 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
10856940278 56941342 + ENSG00000261270
Exon structure


ENSG00000261270
10956941028 56941726 + ENSG00000261114
Exon structure


ENSG00000261114
11056953392 56958802 - GC16M056953



11156953774 56959853 - GC16M056954



11256957265 56957361 + ENSG00000263441
Exon structure


ENSG00000263441
11356953058 56962936 - GC16M056955



11456961850 56983845 + CETP
Exon structure
Hs.89538 1071 ENSG00000087237 cholesteryl ester transfer protein, plasma
11556972940 56976410 - GC16M056973



11657013054 57014113 - LOC100130044
Exon structure

100130044 ENSG00000259922
11757013071 57014100 - GC16M057013



11856989485 57083531 + NLRC5
Exon structure
Hs.528836 84166 ENSG00000140853 NLR family, CARD domain containing 5
11957038170 57039840 + GC16P057038



12057053030 57056416 + GC16P057053



12157052505 57058497 - ENSG00000260145
Exon structure


ENSG00000260145
12257091213 57092303 - ENSG00000260148
Exon structure


ENSG00000260148
12357096560 57132065 + GC16P057096



12457092537 57148369 + CPNE2
Exon structure
Hs.339809 221184 ENSG00000140848 copine II
12557133495 57135445 - LOC105371289
Exon structure

105371289

12657140896 57144586 - ENSG00000279019
Exon structure


ENSG00000279019
12757142652 57144936 + ENSG00000279803
Exon structure


ENSG00000279803
12857152466 57186230 - FAM192A
Exon structure
Hs.396740 80011 ENSG00000172775 family with sequence similarity 192, member A
12957186137 57240475 + RSPRY1
Exon structure
Hs.460885 89970 ENSG00000159579 ring finger and SPRY domain containing 1
13057245832 57246396 - ENSG00000276663
Exon structure


ENSG00000276663
13157247350 57248492 + ENSG00000260038
Exon structure


ENSG00000260038
13257245098 57253635 + ARL2BP
Exon structure
Hs.719024 23568 ENSG00000102931 ADP-ribosylation factor-like 2 binding protein
13357255511 57256164 + LOC105371290
Exon structure

105371290

13457248547 57284687 - PLLP
Exon structure
Hs.632215 51090 ENSG00000102934 plasmolipin
13557299951 57300033 + TRL-CAG2-1
Exon structure

100189130
transfer RNA-Leu (CAG) 2-1
13657300480 57300562 - TRL-CAG2-2
Exon structure

100189089
transfer RNA-Leu (CAG) 2-2
13757321352 57322117 + RPL23AP91
Exon structure

106480337 ENSG00000260965 ribosomal protein L23a pseudogene 91
13857332379 57332599 - ENSG00000271456
Exon structure


ENSG00000271456
13957308122 57389207 - GC16M057308



14057358772 57366190 + CCL22
Exon structure
Hs.534347 6367 ENSG00000102962 chemokine (C-C motif) ligand 22
14157368601 57369084 + GC16P057369



14257372458 57385048 + CX3CL1
Exon structure
Hs.531668 6376 ENSG00000006210 chemokine (C-X3-C motif) ligand 1
14357389318 57390564 - GC16M057389



14457396190 57416063 + CCL17
Exon structure
Hs.546294 6361 ENSG00000102970 chemokine (C-C motif) ligand 17
14557429728 57432446 + GC16P057430



14657428169 57447528 - CIAPIN1
Exon structure
Hs.4900 57019 ENSG00000005194 cytokine induced apoptosis inhibitor 1
14757442128 57442972 + GC16P057442



14857447425 57461275 + COQ9
Exon structure
Hs.513632 57017 ENSG00000088682 coenzyme Q9
14957461055 57462737 + ENSG00000260345
Exon structure


ENSG00000260345
15057466190 57466216 + PIR63065
Exon structure




15157462287 57472010 + POLR2C
Exon structure
Hs.79402 5432 ENSG00000102978 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
15257469364 57469391 + PIR51542
Exon structure




15357471922 57487327 - DOK4
Exon structure
Hs.279832 55715 ENSG00000125170 docking protein 4
15457497376 57497405 + PIR46688
Exon structure




15557512178 57537130 - CCDC102A
Exon structure
Hs.644611 92922 ENSG00000135736 coiled-coil domain containing 102A
15657534798 57534824 + PIR39147
Exon structure




15757529333 57591681 + ADGRG5
Exon structure
Hs.187884 221188 ENSG00000159618 adhesion G protein-coupled receptor G5
15857566622 57566727 + GC16P057566



15957567663 57607352 - LOC105371291
Exon structure

105371291

16057594282 57609334 + GC16P057594



16157603098 57605538 + HMGB3P32
Exon structure

100507549 ENSG00000260828 high mobility group box 3 pseudogene 32
16257622034 57631647 - ENSG00000261633
Exon structure


ENSG00000261633
16357629870 57632392 - GC16M057629



16457610652 57665580 + ADGRG1
Exon structure
Hs.513633 9289 ENSG00000205336 adhesion G protein-coupled receptor G1
16557639462 57640280 + GC16P057639



16657649954 57656542 - GC16M057649



16757658434 57659012 + GC16P057658



16857661858 57663443 - LOC105371292
Exon structure

105371292

16957668187 57689378 + ADGRG3
Exon structure
Hs.383403 222487 ENSG00000182885 adhesion G protein-coupled receptor G3
17057681124 57701730 - ENSG00000260467
Exon structure


ENSG00000260467
17157694793 57731805 + DRC7
Exon structure
Hs.513635 84229 ENSG00000159625 dynein regulatory complex subunit 7
17257713062 57714236 - GC16M057713



17357713782 57714957 + LOC100421594
Exon structure

100421594 ENSG00000260438
17457716486 57726363 + GC16P057716



17557724460 57724488 + PIR59892
Exon structure




17657735720 57757250 + KATNB1
Exon structure
Hs.275675 10300 ENSG00000140854 katanin p80 (WD repeat containing) subunit B 1
17757746644 57747608 - GC16M057746



17857759358 57760024 + ENSG00000276166
Exon structure


ENSG00000276166
17957766524 57771846 + GC16P057766



18057772289 57772352 - MIR6772
Exon structure

102465463 ENSG00000274816 microRNA 6772
18157760496 57799747 + GC16P057760



18257798186 57816946 + LOC388282
Exon structure
Hs.434720 388282 ENSG00000187185 Uncharacterized LOC388282 (est)
18357758217 57863053 - KIFC3
Exon structure
Hs.23131 3801 ENSG00000140859 kinesin family member C3
18457830535 57830642 - GC16M057830



18557830536 57830642 - RNU6-20P
Exon structure

106480706 ENSG00000206833 RNA, U6 small nuclear 20, pseudogene
18657828128 57833143 - GC16M057828



18757874384 57874530 - ENSG00000265209
Exon structure


ENSG00000265209
18857890714 57892369 + GC16P057890



18957897950 57900056 + GC16P057897



19057902112 57912308 - GC16M057902



19157916812 57916842 + PIR51315
Exon structure




19257916812 57916842 + GC16P057918



19357917458 57921242 + LOC105376771
Exon structure

105376771

19457882340 57979295 - CNGB1
Exon structure
Hs.147062 1258 ENSG00000070729 cyclic nucleotide gated channel beta 1
19557938684 57942535 - GC16M057938



19657958836 57960630 + GC16P057958



19757967018 57968656 - GC16M057968



19857967892 57968770 + GC16P057967



19957976435 57988354 + TEPP
Exon structure
Hs.132976 374739 ENSG00000159648 testis, prostate and placenta expressed
20057997567 57997598 - PIR35383
Exon structure




20157997567 57997598 - GC16M057997



20257994668 58000684 - ZNF319
Exon structure
Hs.129268 57567 ENSG00000166188 zinc finger protein 319
20357999546 58021623 + USB1
Exon structure
Hs.408702 79650 ENSG00000103005 U6 snRNA biogenesis 1
20458028324 58033738 + GC16P058028



20558025378 58046901 + MMP15
Exon structure
Hs.80343 4324 ENSG00000102996 matrix metallopeptidase 15 (membrane-inserted)
20658045014 58045042 + PIR61773
Exon structure




20758083068 58083168 - ENSG00000207173
Exon structure


ENSG00000207173
20858083069 58083168 - GC16M058083



20958091116 58092990 - LOC100125393
Exon structure

100125393 ENSG00000261151
21058092053 58092947 - GC16M058092



21158116885 58119353 + ENSG00000260545
Exon structure


ENSG00000260545
21258113588 58129450 - CFAP20
Exon structure
Hs.532755 29105 ENSG00000070761 cilia and flagella associated protein 20
21358096202 58150181 - GC16M058096



21458138800 58148474 + GC16P058138



21558129480 58163295 + LOC101927556
Exon structure

101927556 ENSG00000260927
21658156365 58156394 + PIR53344
Exon structure




21758160235 58160265 - PIR36831
Exon structure




21858160235 58160265 - GC16M058160



21958160953 58160980 + PIR53899
Exon structure




22058161460 58161488 + PIR46560
Exon structure




22158163450 58178129 + GC16P058164



22258157907 58197920 - CSNK2A2
Exon structure
Hs.82201 1459 ENSG00000070770 casein kinase 2, alpha prime polypeptide
22358199568 58199836 - RN7SL645P
Exon structure

106479457 ENSG00000240863 RNA, 7SL, cytoplasmic 645, pseudogene
22458197112 58217805 + ENSG00000260867
Exon structure


ENSG00000260867
22558196964 58283836 + CCDC113
Exon structure
Hs.11614 29070 ENSG00000103021 coiled-coil domain containing 113
22658238573 58249851 - LOC105371293
Exon structure

105371293

22758249742 58253127 - GC16M058249



22858280503 58280529 + PIR34447
Exon structure




22958281689 58282175 + GC16P058281



23058279997 58295047 - PRSS54
Exon structure
Hs.411239 221191 ENSG00000103023 protease, serine, 54
23158295069 58300850 + LOC105371294
Exon structure

105371294

23258267556 58345954 + GC16P058267



23358295080 58406144 + GINS3
Exon structure
Hs.47125 64785 ENSG00000181938 GINS complex subunit 3 (Psf3 homolog)
23458353146 58353178 + GC16P058353



23558366156 58366182 - PIR48676
Exon structure




23658378051 58378148 - GC16M058378



23758378052 58378148 - RNU6-269P
Exon structure

106481263 ENSG00000212379 RNA, U6 small nuclear 269, pseudogene
23858382989 58383798 - ENSG00000261078
Exon structure


ENSG00000261078
23958384442 58384542 - RNU6-1110P
Exon structure

106480638 ENSG00000252271 RNA, U6 small nuclear 1110, pseudogene
24058392153 58392807 - ENSG00000276131
Exon structure


ENSG00000276131
24158413428 58413757 + GC16P058413



24258418920 58424047 - GC16M058420



24358423076 58425939 - GC16M058423



24458439918 58442951 - GC16M058439



24558421326 58462470 + ENSG00000260186
Exon structure


ENSG00000260186
24658446791 58447019 - GC16M058446



24758461538 58462856 + LOC105371295
Exon structure

105371295

24858462846 58513628 + NDRG4
Exon structure
Hs.322430 65009 ENSG00000103034 NDRG family member 4
24958496907 58497014 + GC16P058496



25058496908 58497014 + RNU6-103P
Exon structure

106480552 ENSG00000200556 RNA, U6 small nuclear 103, pseudogene
25158500826 58502406 - GC16M058500



25258507968 58507995 + PIR50383
Exon structure




25358513284 58515490 - GC16M058514



25458513993 58515478 - GC16M058513



25558516947 58516975 + PIR59635
Exon structure




25658515479 58521181 + SETD6
Exon structure
Hs.731691 79918 ENSG00000103037 SET domain containing 6
25758522970 58523842 + ENSG00000276259
Exon structure


ENSG00000276259
25858546682 58546712 - PIR40366
Exon structure




25958546682 58546712 - GC16M058546



26058548499 58548633 - SNORA46
Exon structure
Hs.688592 677827 ENSG00000207493 small nucleolar RNA, H/ACA box 46
26158548498 58548633 - GC16M058548



26258548498 58548633 - GC16M058549



26358554337 58554935 + ENSG00000279816
Exon structure


ENSG00000279816
26458559795 58559931 - GC16M058560



26558559796 58559931 - SNORA76A
Exon structure
Hs.677515 677830 ENSG00000281910 small nucleolar RNA, H/ACA box 76A
26658519946 58629886 - CNOT1
Exon structure
Hs.460923 23019 ENSG00000125107 CCR4-NOT transcription complex, subunit 1
26758597589 58597945 - ENSG00000260865
Exon structure


ENSG00000260865
26858665109 58685104 - SLC38A7
Exon structure
Hs.10499 55238 ENSG00000103042 solute carrier family 38, member 7
26958684669 58707611 + LOC105371297
Exon structure

105371297

27058705799 58706297 - ENSG00000279889
Exon structure


ENSG00000279889
27158707131 58734357 - GOT2
Exon structure
Hs.599470 2806 ENSG00000125166 glutamic-oxaloacetic transaminase 2, mitochondrial
27258728596 58728676 - RNY5P9
Exon structure

100169836
RNA, Ro-associated Y5 pseudogene 9
27358732367 58732450 - GC16M058732



27458744250 58744357 - GC16M058744



27558744251 58744357 - RNU6-1155P
Exon structure

106481544 ENSG00000200424 RNA, U6 small nuclear 1155, pseudogene
27658770524 58770820 + RN7SL143P
Exon structure

106479273 ENSG00000244003 RNA, 7SL, cytoplasmic 143, pseudogene
27758776540 58777563 + GEMIN8P2
Exon structure

644600 ENSG00000260451 gem (nuclear organelle) associated protein 8 pseudogene 2
27858786823 58786849 + PIR49981
Exon structure




27958825891 58826368 + RPL12P36
Exon structure

100271408 ENSG00000242423 ribosomal protein L12 pseudogene 36
28058847743 58880381 - LOC105371296
Exon structure

105371296 ENSG00000261638
28158874548 58885757 - GC16M058874



28258902678 58903896 + GC16P058902



28358912196 58914422 + GC16P058912



28458733912 59108974 + ENSG00000245768
Exon structure


ENSG00000245768