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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 13

   GeneLoc map region (26,366,780 - 30,368,905 bp) around gene/marker "GSX1"

   Explanation:
   GSX1 is located at 28,366,780-28,368,905 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
125946209 26599989 + ATP8A2
Exon structure
Hs.444957 51761 ENSG00000132932 ATPase, aminophospholipid transporter, class I, type 8A, member 2
226437388 26437805 - ENSG00000180803
Exon structure


ENSG00000180803
326440063 26440094 + PIR50437
Exon structure




426440063 26440094 + GC13P026443



526442061 26455095 + ENSG00000215549
Exon structure


ENSG00000215549
626452422 26452679 - ENSG00000268344
Exon structure


ENSG00000268344
726518632 26518891 + RN7SL741P
Exon structure

hugo1547 ENSG00000242381 RNA, 7SL, cytoplasmic 741, pseudogene
826524842 26524959 - RNY1P3
Exon structure

100873803 ENSG00000223158 RNA, Ro-associated Y1 pseudogene 3
926545852 26546315 - GC13M026548



1026561613 26561640 + PIR56473
Exon structure




1126618735 26625198 - SHISA2
Exon structure
Hs.433791 387914 ENSG00000180730 shisa family member 2
1226626414 26627523 - LINC00415
Exon structure

100874163 ENSG00000231983 long intergenic non-protein coding RNA 415
1326626436 26627564 - GC13M026628



1426689950 26693125 - PRUNEP1
Exon structure

100129595 ENSG00000234706 prune exopolyphosphatase pseudogene 1
1526691686 26693102 - GC13M026694



1626698247 26699370 - GC13M026699



1726688547 26728313 - ATP8A2P3
Exon structure

100874518 ENSG00000233963 ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 3
1826688547 26796398 - GC13M026695



1926706253 26796791 - RNF6
Exon structure
Hs.136885 6049 ENSG00000127870 ring finger protein (C3H2C3 type) 6
2026803469 26803781 - ENSG00000271559
Exon structure


ENSG00000271559
2126808350 26811266 + PRKRIRP6
Exon structure

100128764 ENSG00000227882 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 6
2226810998 26811028 - GC13M026812



2326810998 26811028 - PIR37941
Exon structure




2426828276 26979375 + CDK8
Exon structure
Hs.382306 1024 ENSG00000132964 cyclin-dependent kinase 8
2526911704 26974652 + GC13P026911



2626963892 26967368 + GC13P026966



2726979086 26979371 + GC13P026986



2826979086 26979374 + GC13P026985



2927083364 27092904 + GC13P027086



3027150995 27151858 + RPS3AP44
Exon structure

646527 ENSG00000234031 ribosomal protein S3a pseudogene 44
3127131840 27263085 + WASF3
Exon structure
Hs.618732 10810 ENSG00000132970 WAS protein family, member 3
3227180681 27215501 - WASF3-AS1
Exon structure

100874061 ENSG00000237001 WASF3 antisense RNA 1
3327261311 27261338 + PIR53379
Exon structure




3427297349 27297381 - GC13M027297



3527297750 27297781 + GC13P027297



3627297787 27297819 + GC13P027303



3727297820 27297855 + GC13P027299



3827298671 27298714 + GC13P027304



3927298726 27298756 + GC13P027298



4027318259 27319594 - GC13M027318



4127329337 27334922 - GPR12
Exon structure
Hs.123034 2835 ENSG00000132975 G protein-coupled receptor 12
4227344326 27344345 - GC13M027345



4327359863 27359900 + PIR38095
Exon structure




4427380021 27380051 - GC13M027380



4527380063 27380106 - GC13M027381



4627479499 27479998 + FGFR1OP2P1
Exon structure

100873883 ENSG00000230256 FGFR1 oncogene partner 2 pseudogene 1
4727551680 27551926 + RPS21P8
Exon structure

100873798 ENSG00000223782 ribosomal protein S21 pseudogene 8
4827591688 27592046 - GC13M027593



4927591654 27592165 - RPS20P32
Exon structure

100129306 ENSG00000218198 ribosomal protein S20 pseudogene 32
5027617763 27619944 + GC13P027617



5127632487 27639529 + GC13P027635



5227642762 27642954 + GC13P027645



5327651355 27652091 + RBBP8P2
Exon structure

100420607
retinoblastoma binding protein 8 pseudogene 2
5427640287 27746033 - USP12
Exon structure
Hs.42400 219333 ENSG00000152484 ubiquitin specific peptidase 12
5527736992 27743272 + USP12-AS1
Exon structure

100874070 ENSG00000232162 USP12 antisense RNA 1
5627746396 27757135 + USP12-AS2
Exon structure

100874071 ENSG00000230641 USP12 antisense RNA 2 (head to head)
5727752302 27760746 - GC13M027755



5827775343 27776444 - GC13M027778



5927781432 27782326 - GC13M027784



6027790495 27790521 - PIR56248
Exon structure




6127810419 27810948 - ENSG00000234772
Exon structure


ENSG00000234772
6227819766 27825691 - GC13M027822



6327825499 27830420 + GC13P027849



6427825446 27830828 + RPL21
Exon structure
Hs.381123; Hs.535873 6144 ENSG00000122026 ribosomal protein L21
6527828748 27828777 + PIR55933
Exon structure




6627829200 27829272 + GC13P027846



6727829201 27829272 + SNORD102
Exon structure

26771 ENSG00000207500 small nucleolar RNA, C/D box 102
6827829537 27829663 + GC13P027848



6927829538 27829663 + SNORA27
Exon structure
Hs.689719 619499 ENSG00000207051 small nucleolar RNA, H/ACA box 27
7027829537 27829666 + GC13P027845



7127829537 27829666 + GC13P027847



7227830378 27830410 + GC13P027843



7327844464 27847827 + RASL11A
Exon structure
Hs.192131 387496 ENSG00000122035 RAS-like, family 11, member A
7427883391 27883422 + GC13P027883



7527894150 27894296 + ENSG00000221756
Exon structure


ENSG00000221756
7627917785 27917883 - RNU6-70P
Exon structure

hugo3041 ENSG00000252247 RNA, U6 small nuclear 70, pseudogene
7727947485 27948503 + ENSG00000229609
Exon structure


ENSG00000229609
7827976614 27976724 - GC13M027980



7927976613 27976724 - RNY1P1
Exon structure

100873802 ENSG00000201242 RNA, Ro-associated Y1 pseudogene 1
8027998681 28009958 + GTF3A
Exon structure
Hs.445977 2971 ENSG00000122034 general transcription factor IIIA
8128008286 28008752 - ENSG00000203602
Exon structure


ENSG00000203602
8228009776 28024739 - MTIF3
Exon structure
Hs.534582 219402 ENSG00000122033 mitochondrial translational initiation factor 3
8328014343 28024724 - GC13M028015



8428024405 28024432 - PIR36871
Exon structure




8528033711 28034073 + GC13P028033



8628042430 28043015 - GC13M028045



8728062275 28062369 + RNU6-63P
Exon structure

100873768 ENSG00000252499 RNA, U6 small nuclear 63, pseudogene
8828114377 28119606 + GC13P028114



8928120050 28194720 - LNX2
Exon structure
Hs.132359 222484 ENSG00000139517 ligand of numb-protein X 2
9028183505 28183539 + GC13P028183



9128198329 28198871 + GC13P028203



9228198329 28198871 + GC13P028204



9328194880 28241559 + POLR1D
Exon structure
Hs.507584 51082 ENSG00000186184 polymerase (RNA) I polypeptide D, 16kDa
9428196012 28241547 + GC13P028196



9528252403 28254709 - GC13M028253



9628270210 28271439 - NPM1P4
Exon structure

100128903 ENSG00000226703 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 4
9728312872 28314262 + GC13P028312



9828322246 28322288 + GC13P028322



9928366780 28368905 + GSX1
Exon structure
Hs.351785 219409 ENSG00000169840 GS homeobox 1
10028402900 28403006 + RNU6-73P
Exon structure

hugo3072 ENSG00000207330 RNA, U6 small nuclear 73, pseudogene
10128402899 28403006 + GC13P028407



10228407581 28495541 - PDX1-AS1
Exon structure

100861550 ENSG00000247381 PDX1 antisense RNA 1
10328494157 28500451 + PDX1
Exon structure
Hs.32938 3651 ENSG00000139515 pancreatic and duodenal homeobox 1
10428519343 28519727 + ATP5EP2
Exon structure
Hs.574118 432369 ENSG00000180389 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2
10528527485 28528669 - GC13M028528



10628527663 28529507 + LINC00543
Exon structure
Hs.197435 100132234 ENSG00000260704 long intergenic non-protein coding RNA 543
10728535055 28535833 - GC13M028537



10828536274 28545276 - CDX2
Exon structure
Hs.174249 1045 ENSG00000165556 caudal type homeobox 2
10928547232 28547249 + GC13P028547



11028551851 28562791 - URAD
Exon structure
Hs.705356 646625 ENSG00000183463 ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase
11128563435 28563721 - RN7SL272P
Exon structure

hugo1035 ENSG00000242360 RNA, 7SL, cytoplasmic 272, pseudogene
11228568289 28568315 + PIR32072
Exon structure




11328578084 28597558 - GC13M028578



11428588621 28597558 - GC13M028594



11528577411 28674729 - FLT3
Exon structure
Hs.507590 2322 ENSG00000122025 fms-related tyrosine kinase 3
11628641724 28642480 + KATNBL1P1
Exon structure

100420919 ENSG00000271026 katanin p80 subunit B-like 1 pseudogene 1
11728681568 28682014 + CHCHD2P8
Exon structure

646630 ENSG00000235115 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 8
11828710980 28713311 - PAN3-AS1
Exon structure
Hs.123191 100288730 ENSG00000261485 PAN3 antisense RNA 1
11928788650 28790034 + EEF1A1P3
Exon structure

100421865 ENSG00000232587 eukaryotic translation elongation factor 1 alpha 1 pseudogene 3
12028712643 28869475 + PAN3
Exon structure
Hs.645015 255967 ENSG00000152520 PAN3 poly(A) specific ribonuclease subunit
12128806638 28806744 + RNU6-82P
Exon structure

100873781 ENSG00000200840 RNA, U6 small nuclear 82, pseudogene
12228806637 28806744 + GC13P028811



12328813823 28814010 + GC13P028816



12428813694 28830676 + GC13P028817



12528868449 28868683 + GC13P028872



12628870242 28870445 - GC13M028871



12728872165 28872847 - GC13M028872



12828882717 28883502 + GC13P028885



12928959688 28961478 - GC13M028963



13028874483 29069265 - FLT1
Exon structure
Hs.594454 2321 ENSG00000102755 fms-related tyrosine kinase 1
13129069770 29071404 + GC13P029073



13229157004 29157836 + GC13P029157



13329172954 29174341 + EIF4A1P7
Exon structure

341784 ENSG00000235472 eukaryotic translation initiation factor 4A1 pseudogene 7
13429173843 29174130 + GC13P029178



13529203930 29204018 + GC13P029207



13629221737 29223902 + GC13P029221



13729223912 29223943 + GC13P029223



13829233141 29253094 + POMP
Exon structure
Hs.268742 51371 ENSG00000132963 proteasome maturation protein
13929233241 29253062 + GC13P029234



14029252194 29252225 + PIR58876
Exon structure




14129252194 29252225 + GC13P029254



14229274201 29278694 - GC13M029275



14329277838 29277944 - GC13M029282



14429277839 29277944 - RNU6-53P
Exon structure

100873762 ENSG00000202237 RNA, U6 small nuclear 53, pseudogene
14529277964 29280889 + GC13P029277



14629274201 29293150 - SLC46A3
Exon structure
Hs.117167 283537 ENSG00000139508 solute carrier family 46, member 3
14729293262 29299073 + GC13P029297



14829295001 29298296 - CYP51A1P2
Exon structure

83530 ENSG00000233588 cytochrome P450, family 51, subfamily A, polypeptide 1 pseudogene 2
14929352695 29353074 + POM121L13P
Exon structure

100874379 ENSG00000236339 POM121 transmembrane nucleoporin-like 13, pseudogene
15029722796 29722915 - GC13M029722



15129646121 29855907 + GC13P029646



15229796699 29796778 + ENSG00000221670
Exon structure


ENSG00000221670
15329818810 29818929 + GC13P029818



15429813516 29824691 - MTUS2-AS2
Exon structure

100874106 ENSG00000236758 MTUS2 antisense RNA 2
15529598748 30080084 + MTUS2
Exon structure
Hs.22287 23281 ENSG00000132938 microtubule associated tumor suppressor candidate 2
15629880844 29882111 + GAPDHP69
Exon structure

2611 ENSG00000223460 glyceraldehyde 3 phosphate dehydrogenase pseudogene 69
15729913703 29914006 - ENSG00000270680
Exon structure


ENSG00000270680
15829968219 29968247 + PIR44178
Exon structure




15930050652 30064242 - MTUS2-AS1
Exon structure
Hs.577987 100874107 ENSG00000179141 MTUS2 antisense RNA 1
16030065123 30066639 - GC13M030065



16130070553 30071926 + GC13P030070



16230084226 30084254 - PIR48904
Exon structure




16330085353 30085382 - PIR61494
Exon structure




16430086439 30086471 - GC13M030088



16530086439 30086471 - PIR35309
Exon structure




16630083547 30169825 - SLC7A1
Exon structure
Hs.14846 6541 ENSG00000139514 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
16730144334 30144360 - PIR32808
Exon structure




16830160970 30161289 + GC13P030163



16930170020 30170919 + GC13P030173



17030221772 30229714 + GC13P030224



17130229207 30229615 - GC13M030232



17230338508 30424821 - UBL3
Exon structure
Hs.145575 5412 ENSG00000122042 ubiquitin-like 3