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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 13

   GeneLoc map region (19,140,585 - 23,265,576 bp) around gene/marker "IFT88"

   Explanation:
   IFT88 is located at 21,140,585-21,265,576 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
119174124 19187652 + GC13P019175



219183186 19183845 + LONRF2P2
Exon structure

100421799 ENSG00000233905 LON peptidase N-terminal domain and ring finger 2 pseudogene 2
319184438 19185815 - LINC00388
Exon structure

100874153 ENSG00000229788 long intergenic non-protein coding RNA 388
419197414 19197447 + GC13P019197



519220888 19220921 + GC13P019220



619238296 19241874 + FEM1AP4
Exon structure

729524 ENSG00000235876 fem-1 homolog a (C. elegans) pseudogene 4
719248616 19248646 + GC13P019248



819246967 19250303 + LINC00387
Exon structure

100874152 ENSG00000231914 long intergenic non-protein coding RNA 387
919254634 19257440 + TERF1P5
Exon structure

283523 ENSG00000226361 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 5
1019271143 19271651 + FAM207BP
Exon structure

729535 ENSG00000228797 family with sequence similarity 207, member B, pseudogene
1119283849 19284042 - BCYRN1P3
Exon structure

654337
brain cytoplasmic RNA 1, pseudogene 3
1219292907 19293869 - ENSG00000236169
Exon structure


ENSG00000236169
1319294335 19294365 + GC13P019295



1419297860 19299044 - GXYLT1P1
Exon structure

100101111 ENSG00000230931 glucoside xylosyltransferase 1 pseudogene 1
1519298555 19299044 - GC13M019300



1619300846 19301582 + CNN2P12
Exon structure

100131550 ENSG00000204718 calponin 2 pseudogene 12
1719307859 19309036 + ZNF965P
Exon structure

100132598 ENSG00000227784 zinc finger protein 965, pseudogene
1819312243 19318709 - GC13M019314



1919315870 19316858 - CYP4F34P
Exon structure

100422247 ENSG00000244155 cytochrome P450, family 4, subfamily F, polypeptide 34, pseudogene
2019319689 19319719 - GC13M019319



2119326568 19326595 - PIR48570
Exon structure




2219327527 19327553 - PIR32480
Exon structure




2319328897 19328927 - GC13M019331



2419330124 19330153 - PIR50321
Exon structure




2519337013 19337043 - GC13M019340



2619337013 19337043 - PIR46230
Exon structure




2719343948 19367598 - GC13M019343



2819358468 19358497 - PIR47625
Exon structure




2919367815 19367845 - GC13M019367



3019371046 19371076 - GC13M019372



3119371528 19371558 - GC13M019371



3219378310 19378340 - GC13M019378



3319381509 19381538 + GC13P019381



3419382149 19382178 - PIR59588
Exon structure




3519381416 19382995 - SNX18P26
Exon structure

100419038 ENSG00000227568 sorting nexin 18 pseudogene 26
3619382375 19382405 - GC13M019391



3719382528 19382564 - GC13M019387



3819383111 19383141 - GC13M019388



3919383970 19384188 + LINC00328-2P
Exon structure

100874404 ENSG00000225016 long intergenic non-protein coding RNA 328-2, pseudogene
4019385283 19411480 - LOC645626
Exon structure

645626

4119411282 19411311 - PIR49646
Exon structure




4219411907 19412238 - RHOT1P3
Exon structure

100462810 ENSG00000242756 ras homolog family member T1 pseudogene 3
4319412207 19412236 - PIR40032
Exon structure




4419390858 19446109 - ANKRD20A9P
Exon structure
Hs.742626 284232 ENSG00000206192 ankyrin repeat domain 20 family, member A9, pseudogene
4519427511 19427538 + PIR61929
Exon structure




4619433967 19434882 + ENSG00000227332
Exon structure


ENSG00000227332
4719443325 19443431 - RNU6-55P
Exon structure

100873763 ENSG00000223024 RNA, U6 small nuclear 55, pseudogene
4819446358 19446388 - GC13M019447



4919454193 19454297 + GC13P019459



5019454194 19454297 + RNU6-76P
Exon structure

100873777 ENSG00000206787 RNA, U6 small nuclear 76, pseudogene
5119464957 19469880 - SNX19P2
Exon structure

400094 ENSG00000235500 sorting nexin 19 pseudogene 2
5219466400 19469370 - GC13M019468



5319479579 19500881 + LINC00408
Exon structure
Hs.549878 100652856 ENSG00000226250 long intergenic non-protein coding RNA 408
5419496029 19497905 - ENSG00000231358
Exon structure


ENSG00000231358
5519496029 19497905 + GC13P019497



5619521321 19521347 - PIR50693
Exon structure




5719520735 19527051 - GC13M019531



5819536750 19536777 - PIR33396
Exon structure




5919538090 19539491 - GC13M019538



6019564028 19564058 - GC13M019566



6119564028 19564058 - PIR37468
Exon structure




6219564545 19565918 - GC13M019567



6319520895 19636858 - PHF2P2
Exon structure

100873793 ENSG00000226057 PHD finger protein 2 pseudogene 2
6419582725 19582751 - PIR40272
Exon structure




6519582399 19586774 + LINC00442
Exon structure
Hs.314114 348021 ENSG00000232685 long intergenic non-protein coding RNA 442
6619582332 19589338 + GC13P019586



6719586196 19586225 - PIR53059
Exon structure




6819589627 19593476 - USP24P1
Exon structure

100874248 ENSG00000229375 ubiquitin specific peptidase 24 pseudogene 1
6919601977 19602841 + ENSG00000226619
Exon structure


ENSG00000226619
7019600138 19606766 - GTF2IP3
Exon structure

645686 ENSG00000187721 general transcription factor IIi, pseudogene 3
7119620293 19692423 - PHF2P1
Exon structure
Hs.742132 266695
PHD finger protein 2 pseudogene 1
7219662627 19662721 + RNA5SP24
Exon structure

100873356 ENSG00000252287 RNA, 5S ribosomal pseudogene 24
7319669878 19669904 - PIR49445
Exon structure




7419692122 19692149 - PIR48958
Exon structure




7519700539 19713751 + CENPIP1
Exon structure

100419337 ENSG00000224778 centromere protein I pseudogene 1
7619717122 19717217 + RNU6-52P
Exon structure

100873761 ENSG00000252675 RNA, U6 small nuclear 52, pseudogene
7719725694 19726447 - ENSG00000234894
Exon structure


ENSG00000234894
7819727275 19727301 + PIR40837
Exon structure




7919725607 19745541 - SMPD4P2
Exon structure

441654 ENSG00000229147 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 2
8019726707 19745334 - GC13M019734



8119747910 19755992 - TUBA3C
Exon structure
Hs.349695 7278 ENSG00000198033 tubulin, alpha 3c
8219756173 19761496 + ENSG00000121388
Exon structure


ENSG00000121388
8319759428 19759454 + PIR48761
Exon structure




8419760394 19761606 + GC13P019763



8519775777 19801572 - PSPC1P1
Exon structure

642395 ENSG00000227879 paraspeckle component 1 pseudogene 1
8619813676 19816114 - GC13M019813



8719836937 19838013 - ENSG00000232243
Exon structure


ENSG00000232243
8819866608 19866638 - PIR49599
Exon structure




8919866608 19866638 - GC13M019868



9019836940 19919113 - ANKRD26P3
Exon structure
Hs.129283 100101938 ENSG00000237636 ankyrin repeat domain 26 pseudogene 3
9119878205 19879900 - MRPL3P1
Exon structure

359739 ENSG00000215349 mitochondrial ribosomal protein L3 pseudogene 1
9219878733 19879765 - GC13M019880



9319910209 19919146 - GC13M019910



9419919189 19920889 + LINC00421
Exon structure
Hs.375063 100287114 ENSG00000236834 long intergenic non-protein coding RNA 421
9519923276 19982293 + PARP4P2
Exon structure

645771 ENSG00000224976 poly (ADP-ribose) polymerase family, member 4 pseudogene 2
9619956348 19957525 + FAM58DP
Exon structure

100421566 ENSG00000231184 family with sequence similarity 58, member D, pseudogene
9719978749 19979239 - GC13M019979



9819982182 19983669 - ENSG00000229791
Exon structure


ENSG00000229791
9919985371 19990328 + SLC25A15P2
Exon structure

100874522 ENSG00000237164 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 2
10020032538 20032858 - CYCSP32
Exon structure

360181 ENSG00000223625 cytochrome c, somatic pseudogene 32
10119997017 20110903 - TPTE2
Exon structure
Hs.377488 93492 ENSG00000132958 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2
10220061610 20061642 - GC13M020061



10320117405 20117439 + GC13P020117



10420117705 20117739 + GC13P020118



10520133953 20135412 - ESRRAP1
Exon structure

144847 ENSG00000215572 estrogen-related receptor alpha pseudogene 1
10620126710 20144428 - MRPS31P2
Exon structure

341757 ENSG00000232894 mitochondrial ribosomal protein S31 pseudogene 2
10720131972 20139336 - CASC4P1
Exon structure

100420689 ENSG00000238132 cancer susceptibility candidate 4 pseudogene 1
10820133178 20142960 - GC13M020141



10920138108 20139019 - GC13M020140



11020161258 20162490 + LINC00350
Exon structure

100874136 ENSG00000225316 long intergenic non-protein coding RNA 350
11120174561 20174591 + GC13P020174



11220177187 20177214 + PIR42308
Exon structure




11320179732 20199044 + GC13P020182



11420199831 20199858 + PIR53239
Exon structure




11520207788 20247599 + MPHOSPH8
Exon structure
Hs.269654 54737 ENSG00000196199 M-phase phosphoprotein 8
11620241348 20244877 - GC13M020245



11720244480 20246082 + GC13P020244



11820247071 20247197 - ENSG00000257110
Exon structure


ENSG00000257110
11920248764 20250024 + ENSG00000226352
Exon structure


ENSG00000226352
12020248896 20252078 - GC13M020253



12120252830 20253837 + GC13P020254



12220268547 20269240 + ENSG00000269591
Exon structure


ENSG00000269591
12320248896 20357142 - PSPC1
Exon structure
Hs.213198 55269 ENSG00000121390 paraspeckle component 1
12420311117 20311394 - RN7SL166P
Exon structure

hugo919 ENSG00000265624 RNA, 7SL, cytoplasmic 166, pseudogene
12520316480 20316513 + GC13P020316



12620328789 20328823 + GC13P020328



12720351002 20351032 + GC13P020351



12820352575 20352607 - GC13M020352



12920352938 20352967 + GC13P020356



13020352977 20353008 + GC13P020352



13120353247 20353276 + GC13P020353



13220354668 20354711 + GC13P020355



13320354723 20354753 + GC13P020354



13420392261 20392759 - ST6GALNAC4P1
Exon structure

100874524 ENSG00000233469 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1
13520415967 20417812 + ENSG00000223576
Exon structure


ENSG00000223576
13620397622 20437776 - ZMYM5
Exon structure
Hs.530988 9205 ENSG00000132950 zinc finger, MYM-type 5
13720411605 20437664 - GC13M020411



13820437124 20439190 + LOC400099
Exon structure

400099

13920449327 20449425 + ENSG00000238665
Exon structure


ENSG00000238665
14020470493 20470526 + GC13P020470



14120478433 20478463 + GC13P020478



14220473973 20493830 - GC13M020473



14320504888 20504925 + GC13P020504



14420504944 20505031 - ENSG00000266230
Exon structure


ENSG00000266230
14520505016 20505046 + GC13P020505



14620530917 20532202 + GC13P020534



14720542611 20542644 + GC13P020542



14820553663 20554892 + GC13P020557



14920532810 20665968 + ZMYM2
Exon structure
Hs.507433 7750 ENSG00000121741 zinc finger, MYM-type 2
15020599447 20605519 + GC13P020599



15120611568 20611598 + GC13P020611



15220644127 20646276 - KRR1P1
Exon structure

100422486 ENSG00000237672 KRR1, small subunit (SSU) processome component, homolog (yeast) pseudogene 1
15320645636 20645662 + PIR51697
Exon structure




15420640718 20660151 + GC13P020640



15520651665 20653696 + GC13P020653



15620666771 20668283 + GC13P020669



15720676840 20677369 + ENSG00000236076
Exon structure


ENSG00000236076
15820700739 20711260 + GC13P020702



15920712394 20735188 - GJA3
Exon structure
Hs.130313 2700 ENSG00000121743 gap junction protein, alpha 3, 46kDa
16020753117 20753601 - PPIAP28
Exon structure

390378 ENSG00000226633 peptidylprolyl isomerase A (cyclophilin A) pseudogene 28
16120755670 20756081 + LINC00556
Exon structure
Hs.572247 100861551 ENSG00000260131 long intergenic non-protein coding RNA 556
16220763107 20763134 - PIR56183
Exon structure




16320761602 20767114 - GJB2
Exon structure
Hs.524894 2706 ENSG00000165474 gap junction protein, beta 2, 26kDa
16420768551 20770144 + GC13P020773



16520796101 20806534 - GJB6
Exon structure
Hs.511757 10804 ENSG00000121742 gap junction protein, beta 6, 30kDa
16620797500 20806372 - GC13M020815



16720797500 20806372 - GC13M020813



16820797501 20806372 - GC13M020814



16920797547 20806372 - GC13M020816



17020836226 20836259 + GC13P020836



17120842100 20842131 + GC13P020842



17220856669 20857338 + GC13P020859



17321007917 21007985 - MIR4499
Exon structure

100616304 ENSG00000263978 microRNA 4499
17421018411 21018428 - GC13M021018



17520977806 21100012 - CRYL1
Exon structure
Hs.370703 51084 ENSG00000165475 crystallin, lambda 1
17621078654 21078688 + GC13P021078



17721118084 21118124 + GC13P021118



17821138446 21141197 - GC13M021141



17921142039 21142066 + PIR57097
Exon structure




18021186299 21186477 + GC13P021190



18121186300 21186477 + RNU2-7P
Exon structure

100873824 ENSG00000222726 RNA, U2 small nuclear 7, pseudogene
18221140585 21265576 + IFT88
Exon structure
Hs.187376 8100 ENSG00000032742 intraflagellar transport 88 homolog (Chlamydomonas)
18321217617 21217648 + GC13P021220



18421217617 21217648 + PIR33855
Exon structure




18521219438 21219472 + GC13P021219



18621181218 21266663 + SLC35E1P1
Exon structure

727991 ENSG00000238286 solute carrier family 35, member E1 pseudogene 1
18721237404 21245178 + GC13P021237



18821276291 21277857 - GC13M021285



18921276266 21278225 + GC13P021278



19021277842 21277922 + ENSG00000265710
Exon structure


ENSG00000265710
19121276266 21297237 + IL17D
Exon structure
Hs.655142 53342 ENSG00000172458 interleukin 17D
19221278217 21295884 - GC13M021286



19321278219 21295884 - GC13M021287



19421286570 21288285 + LOC100507583
Exon structure

100507583 ENSG00000203614
19521296608 21296904 - GC13M021309



19621296608 21297237 - GC13M021307



19721296608 21297237 - GC13M021306



19821321174 21322196 - RANP8
Exon structure

100420519 ENSG00000233524 RAN, member RAS oncogene family pseudogene 8
19921302870 21348097 - N6AMT2
Exon structure
Hs.26674 221143 ENSG00000150456 N-6 adenine-specific DNA methyltransferase 2 (putative)
20021331368 21348097 - GC13M021331



20121362405 21362439 + GC13P021362



20221399645 21399803 + GC13P021403



20321351468 21477187 - XPO4
Exon structure
Hs.507452 64328 ENSG00000132953 exportin 4
20421429773 21477187 - GC13M021429



20521466439 21466470 + GC13P021466



20621472101 21472135 + GC13P021472



20721477705 21477738 + GC13P021477



20821495803 21497372 - CNOT4P1
Exon structure

100874389 ENSG00000236704 CCR4-NOT transcription complex, subunit 4 pseudogene 1
20921512703 21523798 - HNRNPA1P30
Exon structure

440125 ENSG00000233780 heterogeneous nuclear ribonucleoprotein A1 pseudogene 30
21021530318 21530582 - PPIAP27
Exon structure

100874405 ENSG00000234363 peptidylprolyl isomerase A (cyclophilin A) pseudogene 27
21121533746 21533781 + GC13P021533



21221535373 21536407 + RPSAP54
Exon structure

642641 ENSG00000213621 ribosomal protein SA pseudogene 54
21321543457 21543555 + ENSG00000238893
Exon structure


ENSG00000238893
21421570729 21570763 + GC13P021570



21521573506 21573606 - RNU6-51P
Exon structure

hugo2844 ENSG00000251902 RNA, U6 small nuclear 51, pseudogene
21621579296 21592261 + LATS2-AS1
Exon structure

100874066 ENSG00000233851 LATS2 antisense RNA 1
21721547171 21635722 - LATS2
Exon structure
Hs.78960 26524 ENSG00000150457 large tumor suppressor kinase 2
21821593691 21593728 + GC13P021593



21921598492 21598527 + GC13P021598



22021612668 21612806 - RNU4-9P
Exon structure

100862675 ENSG00000201821 RNA, U4 small nuclear 9, pseudogene
22121668434 21668934 - RPS12P23
Exon structure

338870 ENSG00000180172 ribosomal protein S12 pseudogene 23
22221677142 21678510 - IPPKP1
Exon structure

100874419 ENSG00000225585 inositol 1,3,4,5,6-pentakisphosphate 2-kinase pseudogene 1
22321700409 21700535 - GC13M021703



22421701519 21701552 + GC13P021701



22521714025 21714096 - ENSG00000252128
Exon structure


ENSG00000252128
22621716330 21716629 - RN7SL80P
Exon structure

hugo1622 ENSG00000263607 RNA, 7SL, cytoplasmic 80, pseudogene
22721714754 21721742 + GC13P021715



22821714653 21723224 + SAP18
Exon structure
Hs.524899 10284 ENSG00000150459 Sin3A-associated protein, 18kDa
22921736719 21736750 + GC13P021736



23021727734 21750741 - SKA3
Exon structure
Hs.88523 221150 ENSG00000165480 spindle and kinetochore associated complex subunit 3
23121750372 21753223 + MRPL57
Exon structure
Hs.458367 78988 ENSG00000173141 mitochondrial ribosomal protein L57
23221760068 21760098 - GC13M021760



23321760110 21760153 - GC13M021763



23421761072 21761103 - GC13M021761



23521761114 21761142 - GC13M021762



23621769075 21771935 + GC13P021772



23721776059 21776090 + GC13P021776



23821790694 21790799 + ENSG00000271250
Exon structure


ENSG00000271250
23921799138 21803816 + GC13P021799



24021808707 21809343 + ENSG00000233405
Exon structure


ENSG00000233405
24121834154 21867568 + ESRRAP2
Exon structure

144832 ENSG00000235438 estrogen-related receptor alpha pseudogene 2
24221861545 21868998 + ENSG00000229137
Exon structure


ENSG00000229137
24321872480 21876009 - GC13M021876



24421872264 21906210 + MIPEPP3
Exon structure
Hs.147563 650794 ENSG00000233325 mitochondrial intermediate peptidase pseudogene 3
24521893166 21895829 + GRK6P1
Exon structure

2871 ENSG00000215571 G protein-coupled receptor kinase 6 pseudogene 1
24621877510 21922860 - LINC00539
Exon structure
Hs.659198 100652865 ENSG00000224429 long intergenic non-protein coding RNA 539
24721872264 21967061 + GC13P021881



24821922929 21929241 - GC13M021922



24921932512 21933453 + GAPDHP52
Exon structure

100421313 ENSG00000235076 glyceraldehyde 3 phosphate dehydrogenase pseudogene 52
25021930576 21935682 - GC13M021930



25121934328 21934357 - PIR62666
Exon structure




25221943929 21944038 - RNA5SP25
Exon structure

100873357 ENSG00000222747 RNA, 5S ribosomal pseudogene 25
25321946716 21948651 - GC13M021949



25421947808 21950797 + GC13P021949



25521951235 21951834 + GC13P021951



25621951116 21952013 - ZDHHC20-IT1
Exon structure

100874367 ENSG00000236953 ZDHHC20 intronic transcript 1 (non-protein coding)
25721950486 21995246 - GC13M021953



25821946710 22033509 - ZDHHC20
Exon structure
Hs.564611 253832 ENSG00000180776 zinc finger, DHHC-type containing 20
25921991790 21991821 + GC13P021991



26022009586 22009612 - PIR53166
Exon structure




26122021848 22021877 + GC13P022025



26222021887 22021918 + GC13P022021



26322022157 22022186 + GC13P022022



26422023074 22023117 + GC13P022024



26522023129 22023159 + GC13P022023



26622032145 22032171 - PIR62825
Exon structure




26722032724 22034752 + GC13P022036



26822050543 22050574 + GC13P022050



26922057973 22058313 - HIST1H2BPS3
Exon structure

100820735 ENSG00000226908 HIST1H2B pseudogene 3
27022063286 22064700 + GC13P022063



27122065694 22066002 + GC13P022065



27222101939 22102039 - ENSG00000238878
Exon structure


ENSG00000238878
27322104828 22105995 + FNTAP2
Exon structure

2341 ENSG00000230022 farnesyltransferase, CAAX box, alpha pseudogene 2
27422066828 22178355 - MICU2
Exon structure
Hs.412103 221154 ENSG00000165487 mitochondrial calcium uptake 2
27522125443 22125549 - RNU6-59P
Exon structure

100873767 ENSG00000207518 RNA, U6 small nuclear 59, pseudogene
27622125442 22125549 - GC13M022130



27722182229 22183804 + GC13P022185



27822202537 22203198 - RPS7P10
Exon structure

100128060 ENSG00000226525 ribosomal protein S7 pseudogene 10
27922225659 22245083 - GC13M022228



28022245215 22278640 + FGF9
Exon structure
Hs.111 2254 ENSG00000102678 fibroblast growth factor 9
28122255252 22275971 + GC13P022255



28222294257 22296951 + GC13P022294



28322322472 22326718 + GC13P022327



28422364676 22364982 + RN7SL766P
Exon structure

hugo1574 ENSG00000244197 RNA, 7SL, cytoplasmic 766, pseudogene
28522446909 22449705 - LINC00424
Exon structure
Hs.148951; Hs.737034 100874182 ENSG00000226722 long intergenic non-protein coding RNA 424
28622574694 22574722 - GC13M022574



28722579130 22583784 - GC13M022579



28822642183 22642712 + GC13P022642



28922641787 22643778 + GC13P022643



29022673302 22673683 - NME1P1
Exon structure

100874501 ENSG00000237175 NME/NM23 nucleoside diphosphate kinase 1 pseudogene 1
29122687258 22687477 - MTND3P1
Exon structure

100873208 ENSG00000226118 MT-ND3 pseudogene 1
29222724473 22724504 + GC13P022724



29322615059 22850665 + GC13P022619



29422784424 22850665 + LINC00540
Exon structure
Hs.255773 100506622
long intergenic non-protein coding RNA 540
29523018843 23018874 + GC13P023018



29623100003 23100039 + GC13P023100



29723165578 23168046 - GC13M023165