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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 11

   GeneLoc map region (25,676,440 - 29,743,605 bp) around gene/marker "BDNF"

   Explanation:
   BDNF is located at 27,676,440-27,743,605 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
125756317 25803305 + ENSG00000254456
Exon structure


ENSG00000254456
225945735 25948355 + ENSG00000254754
Exon structure


ENSG00000254754
325945687 25948596 + GC11P025946



426023545 26023571 - PIR46294
Exon structure




526067531 26069269 + LOC100533706
Exon structure

100533706 ENSG00000255086
626210670 26229894 + ENSG00000255243
Exon structure


ENSG00000255243
726307258 26309554 - ENSG00000254819
Exon structure


ENSG00000254819
826440640 26440671 + GC11P026440



926210829 26684836 + ANO3
Exon structure
Hs.91791 63982 ENSG00000134343 anoctamin 3
1026448598 26448959 + ENSG00000255505
Exon structure


ENSG00000255505
1126524765 26526329 + GC11P026527



1226580579 26593815 - MUC15
Exon structure
Hs.407152 143662 ENSG00000169550 mucin 15, cell surface associated
1326689139 26690807 - GC11M026690



1426688566 26744974 - SLC5A12
Exon structure
Hs.148907 159963 ENSG00000148942 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12
1526754797 26754828 + GC11P026754



1626964239 26964265 - PIR54616
Exon structure




1726998453 26998480 - PIR40698
Exon structure




1827015628 27018634 + FIBIN
Exon structure
Hs.712718 387758 ENSG00000176971 fin bud initiation factor homolog (zebrafish)
1927062418 27077059 + GC11P027070



2027062921 27077059 + GC11P027071



2127062947 27077059 + GC11P027072



2227076843 27077059 + GC11P027106



2327076843 27077059 + GC11P027109



2427076846 27077059 + GC11P027111



2527076881 27077059 + GC11P027101



2627076881 27077059 + GC11P027099



2727076894 27077059 + GC11P027107



2827076901 27077059 + GC11P027104



2927076916 27077059 + GC11P027100



3027076916 27077059 + GC11P027103



3127076919 27077059 + GC11P027105



3227076927 27077059 + GC11P027110



3327076927 27077059 + GC11P027108



3427062272 27149356 + BBOX1
Exon structure
Hs.591996 8424 ENSG00000129151 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
3527147800 27147826 + PIR47255
Exon structure




3627148999 27149235 + GC11P027152



3727068733 27241660 - ENSG00000254560
Exon structure


ENSG00000254560
3827238581 27240315 + GC11P027241



3927352374 27385415 - CCDC34
Exon structure
Hs.143733 91057 ENSG00000109881 coiled-coil domain containing 34
4027394547 27395547 - GC11M027394



4127398705 27400730 - GC11M027398



4227405815 27407079 - GC11M027405



4327387508 27494334 - LGR4
Exon structure
Hs.502176 55366 ENSG00000205213 leucine-rich repeat containing G protein-coupled receptor 4
4427489860 27490400 + GC11P027492



4527493276 27503980 + ENSG00000254862
Exon structure


ENSG00000254862
4627505397 27505675 + GC11P027508



4727505366 27505738 + RPL37AP7
Exon structure

100131730 ENSG00000242527 ribosomal protein L37a pseudogene 7
4827515965 27528326 - LIN7C
Exon structure
Hs.91393 55327 ENSG00000148943 lin-7 homolog C (C. elegans)
4927529711 27530878 + GC11P027533



5027543152 27543273 - RNA5SP339
Exon structure

100873602 ENSG00000212289 RNA, 5S ribosomal pseudogene 339
5127574145 27574173 + PIR40346
Exon structure




5227580974 27582409 + GC11P027580



5327585955 27586729 + GC11P027585



5427586954 27587719 + GC11P027586



5527603166 27603647 + RPS25P1
Exon structure

283114 ENSG00000240036 ribosomal protein S25 pseudogene 1
5627603227 27603602 + GC11P027605



5727528385 27719721 + BDNF-AS
Exon structure
Hs.675323 497258 ENSG00000245573 BDNF antisense RNA
5827634830 27635021 + GC11P027637



5927620891 27656267 - GC11M027621



6027639173 27656174 - LINC00678
Exon structure

101410541 ENSG00000254934 long intergenic non-protein coding RNA 678
6127655918 27655948 + GC11P027655



6227679988 27720994 - GC11M027700



6327679970 27721180 - GC11M027699



6427679970 27721764 - GC11M027698



6527679970 27723062 - GC11M027697



6627676440 27743605 - BDNF
Exon structure
Hs.502182 627 ENSG00000176697 brain-derived neurotrophic factor
6727680021 27742225 - GC11M027696



6827717006 27717233 + GC11P027718



6927777988 27778342 - GC11M027778



7027781807 27782132 - GC11M027782



7127717859 27899195 - ENSG00000255496
Exon structure


ENSG00000255496
7227717858 27899195 - GC11M027719



7327827864 27830105 + CBX3P1
Exon structure

159770 ENSG00000177447 chromobox homolog 3 pseudogene 1
7427848709 27849014 + GC11P027851



7527864865 27865138 + GC11P027871



7627864865 27865138 + GC11P027872



7727909718 27912639 - HSP90AA2
Exon structure
Hs.523560 3324 ENSG00000224411 heat shock protein 90kDa alpha (cytosolic), class A member 2
7827911647 27912921 + GC11P027914



7928000216 28041122 - ENSG00000255094
Exon structure


ENSG00000255094
8028031361 28031519 + GC11P028036



8128078361 28078457 + GC11P028081



8228078362 28078457 + MIR610
Exon structure

693195 ENSG00000207874 microRNA 610
8328078414 28078435 - GC11M028078



8428042163 28129855 - KIF18A
Exon structure
Hs.301052 81930 ENSG00000121621 kinesin family member 18A
8528105821 28110127 - GC11M028105



8628118879 28129692 - GC11M028118



8728151483 28151690 - GC11M028158



8828151483 28151690 - GC11M028157



8928166450 28166752 - ATP5LP8
Exon structure

100462862 ENSG00000271332 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 8
9028179130 28179157 + PIR52110
Exon structure




9128202411 28202616 - GC11M028209



9228202411 28202616 - GC11M028210



9328129795 28355054 + METTL15
Exon structure
Hs.243326 196074 ENSG00000169519 methyltransferase like 15
9428282741 28283066 - RN7SKP158
Exon structure

hugo621 ENSG00000222385 RNA, 7SK small nuclear pseudogene 158
9528308743 28309190 - RPS15AP31
Exon structure

100271652 ENSG00000238149 ribosomal protein S15a pseudogene 31
9628308782 28309172 - GC11M028310



9728316721 28316949 - GC11M028319



9828316815 28317147 + GC11P028321



9928316815 28317147 + GC11P028322



10028349128 28352176 + GC11P028349



10128450968 28451000 - GC11M028450



10228451331 28451359 + GC11P028452



10328451370 28451401 + GC11P028451



10428451640 28451669 + GC11P028456



10528453044 28453087 + GC11P028454



10628453099 28453129 + GC11P028453



10728452359 28453889 + GC11P028457



10828373654 28548588 + ENSG00000255322
Exon structure


ENSG00000255322
10928538379 28540888 + ENSG00000254606
Exon structure


ENSG00000254606
11028604865 28604984 + GC11P028607



11128700730 28705016 + ENSG00000248990
Exon structure


ENSG00000248990
11228860962 28864563 - GC11M028863



11328724162 29085368 + ENSG00000249867
Exon structure


ENSG00000249867
11428942288 29024529 - GC11M028945



11529008182 29009045 + OR2BH1P
Exon structure

403238 ENSG00000272882 olfactory receptor, family 2, subfamily BH, member 1 pseudogene
11629126841 29126872 + GC11P029126



11729103586 29180505 - GC11M029106



11829181503 29288281 + ENSG00000254526
Exon structure


ENSG00000254526
11929297202 29298132 + LOC401677
Exon structure

401677 ENSG00000255450
12029298236 29298352 + ENSG00000211499
Exon structure


ENSG00000211499
12129322271 29322620 + GC11P029322



12229413072 29415393 + LOC100421558
Exon structure

100421558 ENSG00000255281
12329467034 29478940 + ENSG00000255227
Exon structure


ENSG00000255227
12429357425 29615842 - ENSG00000254530
Exon structure


ENSG00000254530
12529540623 29574186 + ENSG00000255029
Exon structure


ENSG00000255029
12629587058 29587075 - GC11M029587



12729616465 29652211 + ENSG00000255117
Exon structure


ENSG00000255117
12829672507 29672524 - GC11M029672



12929690433 29691175 - HNRNPRP2
Exon structure

100421354 ENSG00000255047 heterogeneous nuclear ribonucleoprotein R pseudogene 2
13029742946 29743238 - RN7SL240P
Exon structure

hugo1001 ENSG00000243505 RNA, 7SL, cytoplasmic 240, pseudogene
13129735456 29903261 + ENSG00000254734
Exon structure


ENSG00000254734