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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 11

   GeneLoc map region (15,493,895 - 19,544,416 bp) around gene/marker "USH1C"

   Explanation:
   USH1C is located at 17,493,895-17,544,416 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
115430804 15632468 - GC11M015430



215552855 15604112 + LOC105376569
Exon structure

105376569 ENSG00000254946
315571836 15623691 - LOC105376568
Exon structure

105376568 ENSG00000254789
415600479 15600506 + PIR52074
Exon structure




515623774 15705368 + LOC102724957
Exon structure

102724957 ENSG00000254695
615700972 15768476 - LOC105376567
Exon structure

105376567 ENSG00000254645
715910572 15930917 + LOC105376570
Exon structure

105376570 ENSG00000254661
815966450 15968295 - GC11M015966



915969533 15969621 - MIR6073
Exon structure

102464826 ENSG00000274140 microRNA 6073
1015996260 16001902 + GC11P015996



1116015921 16016040 + GC11P016015



1216022699 16047546 + LOC105376572
Exon structure

105376572 ENSG00000254878
1316044104 16049316 - GC11M016044



1416092440 16096712 - GC11M016092



1516124316 16124396 + ENSG00000221556
Exon structure


ENSG00000221556
1616141472 16150883 + GC11P016141



1716200428 16200889 - GC11M016200



1816219174 16219201 - PIR43279
Exon structure




1916223649 16223847 + GC11P016223



2016224118 16224145 - PIR42201
Exon structure




2116226550 16226579 - GC11M016227



2216226550 16226579 - PIR58732
Exon structure




2316239763 16239911 + GC11P016239



2416294904 16295112 + GC11P016294



2516293122 16297521 - GC11M016293



2615966449 16739591 - SOX6
Exon structure
Hs.368226 55553 ENSG00000110693 SRY (sex determining region Y)-box 6
2716356826 16357158 + GC11P016356



2816357869 16358069 + GC11P016357



2916359882 16370958 + GC11P016359



3016482089 16482361 - GC11M016482



3116483362 16484709 - AKR1B1P3
Exon structure

729347 ENSG00000213785 aldo-keto reductase family 1, member B1 pseudogene 3
3216576851 16577135 + RN7SL188P
Exon structure

106479290 ENSG00000241943 RNA, 7SL, cytoplasmic 188, pseudogene
3316613759 16613787 + PIR48413
Exon structure




3416613023 16655850 + LOC105376571
Exon structure

105376571

3516613132 16758354 + C11orf58
Exon structure
Hs.645792 10944 ENSG00000110696 chromosome 11 open reading frame 58
3616768344 16776362 + LOC105376573
Exon structure

105376573

3716777299 16780685 - GC11M016777



3816807078 16807229 + GC11P016807



3916842253 16842587 + RN7SKP90
Exon structure

106481809 ENSG00000199883 RNA, 7SK small nuclear pseudogene 90
4016777297 17014443 - PLEKHA7
Exon structure
Hs.12332 144100 ENSG00000166689 pleckstrin homology domain containing, family A member 7
4116889267 17049666 - GC11M016889



4216974629 16975044 - RPL36AP37
Exon structure

729362 ENSG00000244398 ribosomal protein L36a pseudogene 37
4316974693 16975013 - GC11M016974



4417007878 17007968 - ENSG00000266493
Exon structure


ENSG00000266493
4517014750 17020512 + LOC105376574
Exon structure

105376574

4616970843 17090180 - GC11M016970



4717052001 17052984 + OR7E14P
Exon structure
Hs.523504 10819 ENSG00000184669 olfactory receptor, family 7, subfamily E, member 14 pseudogene
4817054912 17055007 + ENSG00000264378
Exon structure


ENSG00000264378
4917073952 17074035 + ENSG00000221322
Exon structure


ENSG00000221322
5017074652 17074744 - GC11M017074



5117074653 17074744 - SNORD14A
Exon structure

26822 ENSG00000272034 small nucleolar RNA, C/D box 14A
5217075778 17075868 - SNORD14B
Exon structure

85388 ENSG00000201403 small nucleolar RNA, C/D box 14B
5317075777 17075868 - GC11M017076



5417074389 17077787 - RPS13
Exon structure
Hs.446588 6207 ENSG00000110700 ribosomal protein S13
5517077635 17077667 - GC11M017077



5617077635 17077667 - GC11M017079



5717077635 17077667 - GC11M017078



5817092784 17092888 - ENSG00000278353
Exon structure


ENSG00000278353
5917115651 17115763 - GC11M017115



6017115652 17115763 - RNU6-593P
Exon structure

106479828 ENSG00000201586 RNA, U6 small nuclear 593, pseudogene
6117137976 17138265 - RPL34P24
Exon structure

100271309 ENSG00000240808 ribosomal protein L34 pseudogene 24
6217077730 17207996 - PIK3C2A
Exon structure
Hs.175343 5286 ENSG00000011405 phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
6317193444 17194427 + RPL29P21
Exon structure

732199 ENSG00000213779 ribosomal protein L29 pseudogene 21
6417208106 17209279 + GC11P017210



6517209434 17215110 + GC11P017211



6617228251 17229198 + RPS2P40
Exon structure

91561 ENSG00000197149 ribosomal protein S2 pseudogene 40
6717254257 17254287 - GC11M017255



6817254257 17254287 - PIR46564
Exon structure




6917256685 17258400 - GC11M017256



7017208153 17349980 + NUCB2
Exon structure
Hs.654599 4925 ENSG00000070081 nucleobindin 2
7117333650 17337515 + LOC105376575
Exon structure

105376575

7217337757 17344132 + GC11P017338



7317350698 17351866 - LOC105376576
Exon structure

105376576

7417351726 17381661 + NCR3LG1
Exon structure
Hs.146274 374383 ENSG00000188211 natural killer cell cytotoxicity receptor 3 ligand 1
7517370312 17370338 + PIR55310
Exon structure




7617364824 17389331 - KCNJ11
Exon structure
Hs.248141 3767 ENSG00000187486 potassium channel, inwardly rectifying subfamily J, member 11
7717378073 17378099 + PIR55083
Exon structure




7817379390 17379416 + PIR40298
Exon structure




7917379725 17381549 + GC11P017379



8017380167 17381594 - GC11M017380



8117380649 17383531 + ENSG00000260196
Exon structure


ENSG00000260196
8217387123 17388824 + GC11P017387



8317408261 17411511 + GC11P017408



8417409671 17411604 - GC11M017409



8517399807 17425436 + GC11P017401



8617416699 17426389 - GC11M017416



8717392885 17476845 - ABCC8
Exon structure
Hs.54470 6833 ENSG00000006071 ATP-binding cassette, sub-family C (CFTR/MRP), member 8
8817435024 17436209 - SDHCP4
Exon structure

100422598 ENSG00000255035 succinate dehydrogenase complex, subunit C pseudogene 4
8917435672 17436181 - GC11M017435



9017493895 17544416 - USH1C
Exon structure
Hs.502072 10083 ENSG00000006611 Usher syndrome 1C
9117457135 17649252 - GC11M017461



9217559103 17600556 + GC11P017559



9317547373 17647150 + OTOG
Exon structure
Hs.688380 340990 ENSG00000188162 otogelin
9417695022 17697471 + ENSG00000254586
Exon structure


ENSG00000254586
9517695267 17697526 - LOC102723330
Exon structure

102723330 ENSG00000255335
9617719563 17722131 + MYOD1
Exon structure
Hs.181768 4654 ENSG00000129152 myogenic differentiation 1
9717772294 17772408 + GC11P017772



9817773580 17773740 + GC11P017773



9917774396 17777822 + GC11P017774



10017794784 17796650 + GC11P017794



10117734812 17864288 + KCNC1
Exon structure
Hs.552896 3746 ENSG00000129159 potassium channel, voltage gated Shaw related subfamily C, member 1
10217875747 17881653 - GC11M017875



10317887403 17891696 + GC11P017887



10417788048 18013162 - SERGEF
Exon structure
Hs.32470 26297 ENSG00000129158 secretion regulating guanine nucleotide exchange factor
10517952952 17953066 + GC11P017952



10617950435 17964910 + GC11P017950



10718000542 18022931 - ENSG00000255448
Exon structure


ENSG00000255448
10818017564 18042426 - TPH1
Exon structure
Hs.591999 7166 ENSG00000129167 tryptophan hydroxylase 1
10918029871 18092856 + GC11P018029



11018063327 18064466 - GC11M018063



11118067880 18068130 + GC11P018067



11218066651 18069920 - GC11M018067



11318076525 18080296 - GC11M018076



11418069935 18106091 - SAAL1
Exon structure
Hs.591998 113174 ENSG00000166788 serum amyloid A-like 1
11518106583 18106843 + HIGD1AP5
Exon structure

100289300 ENSG00000255254 HIG1 hypoxia inducible domain family, member 1A pseudogene 5
11618099177 18117376 + GC11P018102



11718112472 18116132 - SAA3P
Exon structure
Hs.454496 6290 ENSG00000166787 serum amyloid A3 pseudogene
11818117693 18120017 - GC11M018117



11918120995 18121030 + GC11P018120



12018103652 18138491 + MRGPRX3
Exon structure
Hs.380177 117195 ENSG00000179826 MAS-related GPR, member X3
12118153277 18154255 + LOC645297
Exon structure

645297 ENSG00000254857
12218140186 18189495 - ENSG00000255470
Exon structure


ENSG00000255470
12318112617 18236893 - SAA4
Exon structure
Hs.1955 6291 ENSG00000148965 serum amyloid A4, constitutive
12418182739 18182767 - PIR44852
Exon structure




12518172837 18197348 + MRGPRX4
Exon structure
Hs.632138 117196 ENSG00000179817 MAS-related GPR, member X4
12618188888 18189494 - GC11M018188



12718188904 18191238 + GLTPP1
Exon structure

645312 ENSG00000255138 glycolipid transfer protein pseudogene 1
12818190563 18191220 + GC11P018190



12918196657 18197337 + ENSG00000254546
Exon structure


ENSG00000254546
13018196660 18197345 + LOC645319
Exon structure

645319

13118180489 18239132 - GC11M018180



13218209138 18214562 + LOC494141
Exon structure
Hs.446327 494141 ENSG00000189332 Solute carrier family 25, member 51 pseudogene (est)
13318231355 18248674 - SAA2-SAA4
Exon structure

100528017 ENSG00000255071 SAA2-SAA4 readthrough
13418238233 18248674 - SAA2
Exon structure
Hs.731376 6289 ENSG00000134339 serum amyloid A2
13518248389 18248506 - RNA5SP333
Exon structure

106480763 ENSG00000200336 RNA, 5S ribosomal pseudogene 333
13618253827 18259088 - GC11M018255



13718262021 18262051 + GC11P018262



13818261885 18263501 + ST13P5
Exon structure
Hs.567697 144106 ENSG00000212789 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 5
13918266392 18266510 + GC11P018266



14018266393 18266510 + RNA5SP334
Exon structure

hugo288 ENSG00000201695 RNA, 5S ribosomal pseudogene 334
14118266174 18269977 + SAA1
Exon structure
Hs.632144 6288 ENSG00000173432 serum amyloid A1
14218278668 18322498 - HPS5
Exon structure
Hs.437599 11234 ENSG00000110756 Hermansky-Pudlak syndrome 5
14318322269 18367044 + GTF2H1
Exon structure
Hs.577202 2965 ENSG00000110768 general transcription factor IIH, polypeptide 1, 62kDa
14418349238 18350914 + LOC105376577
Exon structure

105376577

14518372633 18372884 + GC11P018373



14618372027 18375035 - GC11M018372



14718375826 18376194 + GC11P018375



14818387787 18387860 + MIR3159
Exon structure

100423016 ENSG00000264603 microRNA 3159
14918394388 18408425 + LDHA
Exon structure
Hs.2795 3939 ENSG00000134333 lactate dehydrogenase A
15018405609 18406731 + ENSG00000256006
Exon structure


ENSG00000256006
15118412306 18452058 + LDHC
Exon structure
Hs.654377 3948 ENSG00000166796 lactate dehydrogenase C
15218450112 18450868 - ENSG00000256734
Exon structure


ENSG00000256734
15318455824 18479600 + LDHAL6A
Exon structure
Hs.668877 160287 ENSG00000166800 lactate dehydrogenase A-like 6A
15418490239 18490955 - YWHABP2
Exon structure

100422666 ENSG00000256464 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta pseudogene 2
15518468336 18527232 - TSG101
Exon structure
Hs.523512 7251 ENSG00000074319 tumor susceptibility 101
15618506443 18509504 - GC11M018506



15718507608 18508820 - ENSG00000256588
Exon structure


ENSG00000256588
15818511043 18511475 - ENSG00000256361
Exon structure


ENSG00000256361
15918527032 18529213 + GC11P018527



16018538885 18539189 + ENSG00000274589
Exon structure


ENSG00000274589
16118529609 18588938 - UEVLD
Exon structure
Hs.407991 55293 ENSG00000151116 UEV and lactate/malate dehyrogenase domains
16218587825 18592759 - GC11M018587



16318594592 18599683 - LOC100129966
Exon structure

100129966 ENSG00000256282
16418601882 18602649 + ENSG00000279837
Exon structure


ENSG00000279837
16518599787 18610255 + SPTY2D1-AS1
Exon structure
Hs.585529 100506540 ENSG00000247595 SPTY2D1 antisense RNA 1
16618606401 18634791 - SPTY2D1
Exon structure
Hs.745113 144108 ENSG00000179119 SPT2 chromatin protein domain containing 1
16718634870 18635997 + LOC105376578
Exon structure

105376578

16818635625 18636262 + GC11P018635



16918664930 18666484 + LOC100506569
Exon structure

100506569 ENSG00000257043
17018693122 18704785 + TMEM86A
Exon structure
Hs.502100 144110 ENSG00000151117 transmembrane protein 86A
17118701040 18701068 + PIR46171
Exon structure




17218704305 18726230 - IGSF22
Exon structure
Hs.434152 283284 ENSG00000179057 immunoglobulin superfamily, member 22
17318706325 18740568 + LOC105376579
Exon structure

105376579 ENSG00000254966
17418734934 18734963 - PIR60589
Exon structure




17518727928 18792721 - PTPN5
Exon structure
Hs.79092 84867 ENSG00000110786 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
17618827015 18827821 + GC11P018827



17718836205 18837084 + LOC100420123
Exon structure

100420123 ENSG00000276789
17818841685 18846207 + GC11P018841



17918862105 18862495 + GC11P018863



18018863558 18864509 - GC11M018863



18118863546 18864724 - LOC441592
Exon structure

441592 ENSG00000254529
18218870987 18873462 - LOC645397
Exon structure

645397 ENSG00000255511
18318879077 18879266 + GC11P018880



18418879077 18879273 + GC11P018879



18518882259 18885389 - GC11M018882



18618886924 18888136 - LOC390098
Exon structure

390098 ENSG00000254541
18718910234 18911422 - LOC390099
Exon structure

390099 ENSG00000255536
18818933813 18939507 - MRGPRX1
Exon structure
Hs.711459 259249 ENSG00000170255 MAS-related GPR, member X1
18918934985 18939721 + ENSG00000255244
Exon structure


ENSG00000255244
19018956045 18957232 - LOC645415
Exon structure

645415 ENSG00000254738
19118963761 18965370 + GC11P018963



19218971733 18972922 - LOC390101
Exon structure

390101 ENSG00000254720
19319000831 19004199 - GC11M019000



19419029691 19030438 - LOC100420121
Exon structure

100420121 ENSG00000255424
19519054455 19071978 - MRGPRX2
Exon structure
Hs.350566 117194 ENSG00000183695 MAS-related GPR, member X2
19619071989 19074720 + GC11P019071



19719117099 19176422 + ZDHHC13
Exon structure
Hs.188569 54503 ENSG00000177054 zinc finger, DHHC-type containing 13
19819191913 19195186 + GC11P019191



19919182030 19210573 - CSRP3
Exon structure
Hs.83577 8048 ENSG00000129170 cysteine and glycine-rich protein 3 (cardiac LIM protein)
20019224063 19241655 - E2F8
Exon structure
Hs.523526 79733 ENSG00000129173 E2F transcription factor 8
20119196775 19281426 + ENSG00000255308
Exon structure


ENSG00000255308
20219274529 19275269 - PCNAP4
Exon structure

390102 ENSG00000254544 proliferating cell nuclear antigen pseudogene 4
20319297174 19310713 + LOC105376580
Exon structure

105376580 ENSG00000255160
20419328895 19329725 + GC11P019328



20519350814 19351027 + GC11P019352



20619350814 19351027 + GC11P019350



20719380484 19385014 + NAV2-IT1
Exon structure

100874305 ENSG00000255270 NAV2 intronic transcript 1
20819401871 19401981 - GC11M019401



20919401872 19401981 - RNA5SP335
Exon structure

106479007 ENSG00000200687 RNA, 5S ribosomal pseudogene 335
21019502672 19507229 - NAV2-AS5
Exon structure
Hs.434602 100874012 ENSG00000255043 NAV2 antisense RNA 5
21119505947 19510279 + LOC105376582
Exon structure

105376582

21219510890 19524078 - NAV2-AS4
Exon structure
Hs.132600 399876 ENSG00000254622 NAV2 antisense RNA 4
21319530661 19541640 - GC11M019530



21419543481 19546176 - GC11M019543



21519539541 19571984 + GC11P019539



21619538131 19591158 + GC11P019538



21719345247 20121601 + NAV2
Exon structure
Hs.639428; Hs.502116; Hs.639427 89797 ENSG00000166833 neuron navigator 2