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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 11

   GeneLoc map region (15,515,442 - 19,565,963 bp) around gene/marker "USH1C"

   Explanation:
   USH1C is located at 17,515,442-17,565,963 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
115582981 15583010 - GC11M015583



215574401 15612644 + ENSG00000254946
Exon structure


ENSG00000254946
315574305 15613545 + GC11P015578



415593569 15643937 - ENSG00000254789
Exon structure


ENSG00000254789
515593393 15645188 - GC11M015594



615622025 15622052 + PIR52074
Exon structure




715643923 15644161 + GC11P015648



815665431 15726914 + ENSG00000254695
Exon structure


ENSG00000254695
915707560 15707590 - GC11M015707



1015723509 15780444 - ENSG00000254645
Exon structure


ENSG00000254645
1115797897 15798134 + GC11P015801



1215865201 15868939 + GC11P015865



1315932520 15933620 - GC11M015935



1415932503 15948989 + ENSG00000254661
Exon structure


ENSG00000254661
1515987996 15989841 - GC11M015990



1616037467 16037586 + GC11P016040



1716044736 16053061 + ENSG00000254878
Exon structure


ENSG00000254878
1816065774 16068984 + GC11P016065



1916071328 16133415 - GC11M016071



2016145862 16145942 + ENSG00000221556
Exon structure


ENSG00000221556
2116148000 16148280 + GC11P016152



2216221974 16222435 - GC11M016222



2316208327 16274082 - GC11M016208



2416245195 16245393 + GC11P016248



2516261309 16261457 + GC11P016264



2616316450 16316658 + GC11P016320



2715987995 16761138 - SOX6
Exon structure
Hs.368226 55553 ENSG00000110693 SRY (sex determining region Y)-box 6
2816378372 16378704 + GC11P016385



2916379415 16379615 + GC11P016387



3016470335 16472422 - GC11M016471



3116505059 16506256 - AKR1B1P3
Exon structure

729347 ENSG00000213785 aldo-keto reductase family 1, member B1 pseudogene 3
3216598398 16598682 + RN7SL188P
Exon structure

hugo943 ENSG00000241943 RNA, 7SL, cytoplasmic 188, pseudogene
3316487328 16761138 - GC11M016487



3416635306 16635334 + PIR48413
Exon structure




3516634679 16779901 + C11orf58
Exon structure
Hs.645792 10944 ENSG00000110696 chromosome 11 open reading frame 58
3616777572 16778428 + GC11P016777



3716778229 16778260 - GC11M016778



3816789662 16790764 - GC11M016793



3916798846 16802232 - GC11M016802



4016807840 16816870 - GC11M016807



4116828625 16828776 + GC11P016831



4216863800 16864134 + RN7SKP90
Exon structure

hugo837 ENSG00000199883 RNA, 7SK small nuclear pseudogene 90
4316909368 16909396 + GC11P016911



4416909407 16909438 + GC11P016909



4516910107 16910150 + GC11P016912



4616910162 16910192 + GC11P016910



4716799842 17035990 - PLEKHA7
Exon structure
Hs.12332 144100 ENSG00000166689 pleckstrin homology domain containing, family A member 7
4816927921 16927953 - GC11M016927



4916928299 16928327 + GC11P016928



5016928528 16928557 + GC11P016931



5116929528 16929571 + GC11P016930



5216929583 16929613 + GC11P016929



5316876436 17034889 - GC11M016876



5416995968 16996035 - ENSG00000251928
Exon structure


ENSG00000251928
5516996176 16996591 - RPL36AP37
Exon structure

729362 ENSG00000244398 ribosomal protein L36a pseudogene 37
5616996240 16996560 - GC11M017002



5717029425 17029515 - ENSG00000266493
Exon structure


ENSG00000266493
5817042246 17050044 + GC11P017042



5917073548 17074531 + OR7E14P
Exon structure
Hs.523504 10819 ENSG00000184669 olfactory receptor, family 7, subfamily E, member 14 pseudogene
6017071361 17071391 - GC11M017071



6117071403 17071446 - GC11M017073



6217072347 17072376 - GC11M017074



6317072615 17072646 - GC11M017072



6417072656 17072685 - GC11M017076



6517076459 17076554 + ENSG00000264378
Exon structure


ENSG00000264378
6617088667 17089834 + GC11P017091



6717095499 17095582 + ENSG00000221322
Exon structure


ENSG00000221322
6817096200 17096291 - SNORD14A
Exon structure

26822 ENSG00000272034 small nucleolar RNA, C/D box 14A
6917097325 17097415 - SNORD14B
Exon structure

85388 ENSG00000201403 small nucleolar RNA, C/D box 14B
7017097324 17097415 - GC11M017114



7117095936 17099334 - RPS13
Exon structure
Hs.446588 6207 ENSG00000110700 ribosomal protein S13
7217096682 17099015 - GC11M017118



7317099182 17099214 - GC11M017115



7417099182 17099214 - GC11M017116



7517099182 17099214 - GC11M017117



7617137198 17137310 - GC11M017141



7717137199 17137310 - ENSG00000201586
Exon structure


ENSG00000201586
7817159523 17159812 - RPL34P24
Exon structure

100271309 ENSG00000240808 ribosomal protein L34 pseudogene 24
7917099277 17229530 - PIK3C2A
Exon structure
Hs.175343 5286 ENSG00000011405 phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
8017215036 17215855 + GC11P017216



8117214991 17215974 + RPL29P21
Exon structure

732199 ENSG00000213779 ribosomal protein L29 pseudogene 21
8217229653 17230826 + GC11P017230



8317230981 17236657 + GC11P017231



8417249798 17250745 + RPS2P40
Exon structure

91561 ENSG00000197149 ribosomal protein S2 pseudogene 40
8517229700 17371521 + NUCB2
Exon structure
Hs.654599 4925 ENSG00000070081 nucleobindin 2
8617297749 17317713 + GC11P017297



8717298285 17317713 + GC11P017304



8817353589 17371521 + GC11P017356



8917373273 17398888 + NCR3LG1
Exon structure
Hs.146274 374383 ENSG00000188211 natural killer cell cytotoxicity receptor 3 ligand 1
9017391859 17391885 + PIR55310
Exon structure




9117399620 17399646 + PIR55083
Exon structure




9217400937 17400963 + PIR40298
Exon structure




9317402196 17405078 + ENSG00000260196
Exon structure


ENSG00000260196
9417407610 17408297 - GC11M017407



9517406795 17410878 - KCNJ11
Exon structure
Hs.248141 3767 ENSG00000187486 potassium inwardly-rectifying channel, subfamily J, member 11
9617417460 17419055 - GC11M017417



9717439193 17447011 - GC11M017439



9817414432 17498449 - ABCC8
Exon structure
Hs.54470 6833 ENSG00000006071 ATP-binding cassette, sub-family C (CFTR/MRP), member 8
9917457219 17457728 - SDHCP4
Exon structure

100422598 ENSG00000255035 succinate dehydrogenase complex, subunit C pseudogene 4
10017452144 17464338 - GC11M017452



10117498451 17503911 + GC11P017498



10217515447 17518460 - GC11M017516



10317522619 17523596 - GC11M017522



10417515442 17565963 - USH1C
Exon structure
Hs.502072 10083 ENSG00000006611 Usher syndrome 1C (autosomal recessive, severe)
10517568920 17668697 + OTOG
Exon structure
Hs.688380 340990 ENSG00000188162 otogelin
10617716814 17718487 - ENSG00000255335
Exon structure


ENSG00000255335
10717716569 17719018 + ENSG00000254586
Exon structure


ENSG00000254586
10817741110 17743678 + MYOD1
Exon structure
Hs.181768 4654 ENSG00000129152 myogenic differentiation 1
10917750269 17750300 - GC11M017750



11017756359 17804602 + KCNC1
Exon structure
Hs.552896 3746 ENSG00000129159 potassium voltage-gated channel, Shaw-related subfamily, member 1
11117793841 17793955 + GC11P017805



11217795127 17795287 + GC11P017804



11317795943 17799369 + GC11P017806



11417800719 17804602 + GC11P017807



11517816331 17818197 + GC11P017819



11617809595 18034709 - SERGEF
Exon structure
Hs.32470 26297 ENSG00000129158 secretion regulating guanine nucleotide exchange factor
11717974499 17974613 + GC11P017977



11818021093 18034475 - GC11M018021



11918022089 18044478 - ENSG00000255448
Exon structure


ENSG00000255448
12018039111 18063973 - TPH1
Exon structure
Hs.591999 7166 ENSG00000129167 tryptophan hydroxylase 1
12118089427 18089677 + GC11P018089



12218091482 18103284 - GC11M018091



12318091482 18127638 - SAAL1
Exon structure
Hs.591998 113174 ENSG00000166788 serum amyloid A-like 1
12418111043 18112483 - GC11M018111



12518122973 18128393 + HIGD1AP5
Exon structure

100289300 ENSG00000255254 HIG1 hypoxia inducible domain family, member 1A pseudogene 5
12618128130 18128388 + GC11P018128



12718134019 18137679 - SAA3P
Exon structure
Hs.454496 6290 ENSG00000166787 serum amyloid A3 pseudogene
12818142542 18142577 + GC11P018143



12918143264 18143307 + GC11P018144



13018142502 18160027 + MRGPRX3
Exon structure
Hs.380177 117195 ENSG00000179826 MAS-related GPR, member X3
13118174824 18175802 + LOC645297
Exon structure

645297 ENSG00000254857
13218161733 18211042 - ENSG00000255470
Exon structure


ENSG00000255470
13318194384 18195827 + MRGPRX4
Exon structure
Hs.632138 117196 ENSG00000179817 MAS-related GPR, member X4
13418204286 18204314 - PIR44852
Exon structure




13518204623 18204712 + ENSG00000221037
Exon structure


ENSG00000221037
13618210435 18211041 - ENSG00000224002
Exon structure


ENSG00000224002
13718210451 18212785 + GLTPP1
Exon structure

645312 ENSG00000255138 glycolipid transfer protein pseudogene 1
13818212110 18212767 + GC11P018215



13918218204 18218892 + LOC645319
Exon structure

645319 ENSG00000254546
14018230685 18236109 + LOC494141
Exon structure
Hs.446327 494141 ENSG00000189332 Solute carrier family 25, member 51 pseudogene (est)
14118252896 18258440 - SAA4
Exon structure
Hs.1955 6291 ENSG00000148965 serum amyloid A4, constitutive
14218252902 18270221 - SAA2-SAA4
Exon structure

100528017 ENSG00000255071 SAA2-SAA4 readthrough
14318259780 18270221 - SAA2
Exon structure
Hs.731376 6289 ENSG00000134339 serum amyloid A2
14418269936 18270053 - RNA5SP333
Exon structure

hugo1750 ENSG00000200336 RNA, 5S ribosomal pseudogene 333
14518283568 18283598 + GC11P018304



14618283800 18284297 - GC11M018286



14718283432 18285048 + ST13P5
Exon structure
Hs.567697 144106 ENSG00000212789 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 5
14818287939 18288057 + GC11P018303



14918287940 18288057 + RNA5SP334
Exon structure

hugo1751 ENSG00000201695 RNA, 5S ribosomal pseudogene 334
15018287721 18291524 + SAA1
Exon structure
Hs.632144 6288 ENSG00000173432 serum amyloid A1
15118288455 18290866 + GC11P018305



15218297479 18297521 + GC11P018302



15318309438 18317592 - GC11M018309



15418300217 18343745 - HPS5
Exon structure
Hs.437599 11234 ENSG00000110756 Hermansky-Pudlak syndrome 5
15518333064 18343725 - GC11M018333



15618344114 18355156 + GC11P018344



15718343816 18388591 + GTF2H1
Exon structure
Hs.577202 2965 ENSG00000110768 general transcription factor IIH, polypeptide 1, 62kDa
15818373565 18380189 + GC11P018373



15918394180 18394431 + GC11P018394



16018397373 18397741 + GC11P018397



16118409334 18409407 + MIR3159
Exon structure

100423016 ENSG00000264603 microRNA 3159
16218416108 18418945 + GC11P018416



16318415935 18429972 + LDHA
Exon structure
Hs.2795 3939 ENSG00000134333 lactate dehydrogenase A
16418427156 18428278 + ENSG00000256006
Exon structure


ENSG00000256006
16518433853 18473605 + LDHC
Exon structure
Hs.654377 3948 ENSG00000166796 lactate dehydrogenase C
16618471659 18472415 - ENSG00000256734
Exon structure


ENSG00000256734
16718477371 18501147 + LDHAL6A
Exon structure
Hs.668877 160287 ENSG00000166800 lactate dehydrogenase A-like 6A
16818511786 18512502 - LOC100422666
Exon structure

100422666 ENSG00000256464
16918489883 18548779 - TSG101
Exon structure
Hs.523512 7251 ENSG00000074319 tumor susceptibility 101
17018505483 18548467 - GC11M018505



17118529155 18530367 - ENSG00000256588
Exon structure


ENSG00000256588
17218532590 18533022 - ENSG00000256361
Exon structure


ENSG00000256361
17318548579 18550760 + GC11P018548



17418553953 18558311 - GC11M018555



17518551156 18610294 - UEVLD
Exon structure
Hs.407991 55293 ENSG00000151116 UEV and lactate/malate dehyrogenase domains
17618591445 18610294 - GC11M018593



17718610405 18612500 - GC11M018613



17818617001 18621230 - LOC100129966
Exon structure

100129966 ENSG00000256282
17918610329 18631802 + GC11P018610



18018621334 18631802 + SPTY2D1-AS1
Exon structure
Hs.585529 100506540 ENSG00000247595 SPTY2D1 antisense RNA 1
18118627948 18656338 - SPTY2D1
Exon structure
Hs.745113 144108 ENSG00000179119 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
18218657172 18657809 + GC11P018657



18318686477 18688031 + LOC100506569
Exon structure

100506569 ENSG00000257043
18418714669 18726332 + TMEM86A
Exon structure
Hs.502100 144110 ENSG00000151117 transmembrane protein 86A
18518722587 18722615 + PIR46171
Exon structure




18618725852 18747777 - IGSF22
Exon structure
Hs.434152 283284 ENSG00000179057 immunoglobulin superfamily, member 22
18718728084 18762115 + ENSG00000254966
Exon structure


ENSG00000254966
18818743349 18747721 - GC11M018743



18918756481 18756510 - PIR60589
Exon structure




19018749475 18814268 - PTPN5
Exon structure
Hs.79092 84867 ENSG00000110786 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
19118825955 18826033 - ENSG00000265940
Exon structure


ENSG00000265940
19218857752 18858631 + LOC100420123
Exon structure

100420123

19318885096 18886056 - LOC441592
Exon structure

441592 ENSG00000254529
19418892534 18895009 - LOC645397
Exon structure

645397 ENSG00000255511
19518908471 18909664 - LOC390098
Exon structure

390098 ENSG00000254541
19618931981 18932943 - LOC390099
Exon structure

390099 ENSG00000255536
19718955360 18961054 - MRGPRX1
Exon structure
Hs.711459 259249 ENSG00000170255 MAS-related GPR, member X1
19818956532 18961268 + ENSG00000255244
Exon structure


ENSG00000255244
19918971994 18979430 - LOC645415
Exon structure

645415 ENSG00000254738
20018993283 18998617 - LOC390101
Exon structure

390101 ENSG00000254720
20119051238 19051985 - LOC100420121
Exon structure

100420121 ENSG00000255424
20219076002 19082228 - MRGPRX2
Exon structure
Hs.350566 117194 ENSG00000183695 MAS-related GPR, member X2
20319138646 19197969 + ZDHHC13
Exon structure
Hs.188569 54503 ENSG00000177054 zinc finger, DHHC-type containing 13
20419203578 19232120 - CSRP3
Exon structure
Hs.83577 8048 ENSG00000129170 cysteine and glycine-rich protein 3 (cardiac LIM protein)
20519247067 19247625 - GC11M019247



20619245610 19263167 - E2F8
Exon structure
Hs.523526 79733 ENSG00000129173 E2F transcription factor 8
20719218322 19302973 + ENSG00000255308
Exon structure


ENSG00000255308
20819296076 19296816 - PCNAP4
Exon structure

390102 ENSG00000254544 proliferating cell nuclear antigen pseudogene 4
20919321430 19329905 + ENSG00000255160
Exon structure


ENSG00000255160
21019372361 19372574 + GC11P019380



21119372361 19372574 + GC11P019381



21219402031 19406561 + NAV2-IT1
Exon structure

100874305 ENSG00000255270 NAV2 intronic transcript 1 (non-protein coding)
21319423418 19423528 - GC11M019427



21419423419 19423528 - RNA5SP335
Exon structure

hugo1752 ENSG00000200687 RNA, 5S ribosomal pseudogene 335
21519524219 19528776 - NAV2-AS5
Exon structure
Hs.434602 100874012 ENSG00000255043 NAV2 antisense RNA 5
21619532437 19545625 - NAV2-AS4
Exon structure
Hs.132600 399876 ENSG00000254622 NAV2 antisense RNA 4
21719372271 20143147 + NAV2
Exon structure
Hs.639428; Hs.502116; Hs.639427 89797 ENSG00000166833 neuron navigator 2