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Display genomic neighborhood for:
genomic entity (gene/marker)
genomic coordinates

  Chromosome 1

   GeneLoc map region (112,356,433 - 116,414,381 bp) around gene/marker "PTPN22"

   Explanation:
   PTPN22 is located at 114,356,433-114,414,381 bp

# Start
(bp)
End
(bp)
StrandGene Unigene cluster Entrez Gene IdEnsembl Id Description
1112396384 112399527 - KCND3-IT1
Exon structure

100874295 ENSG00000232558 KCND3 intronic transcript 1 (non-protein coding)
2112313284 112531777 - KCND3
Exon structure
Hs.666367 3752 ENSG00000171385 potassium voltage-gated channel, Shal-related subfamily, member 3
3112440069 112440097 - PIR54809
Exon structure




4112451958 112453553 + KCND3-AS1
Exon structure

100873995 ENSG00000237556 KCND3 antisense RNA 1
5112452792 112452819 - PIR55386
Exon structure




6112499051 112499205 + GC01P112503



7112525315 112531670 - GC01M112529



8112525317 112531670 - GC01M112530



9112532392 112541464 + LOC643355
Exon structure
Hs.279714 643355 ENSG00000231437 Uncharacterized LOC643355 (est)
10112548593 112550756 + GC01P112548



11112635477 112686569 - GC01M112636



12112738124 112738228 + ENSG00000239111
Exon structure


ENSG00000239111
13112775208 112775238 - GC01M112777



14112775208 112775238 - PIR62237
Exon structure




15112789046 112789240 + GC01P112792



16112719856 112903150 - ENSG00000231246
Exon structure


ENSG00000231246
17112898429 112898698 + GC01P112902



18112905903 112906203 + GC01P112910



19112905718 112906517 + TXNP3
Exon structure

171419 ENSG00000234388 thioredoxin pseudogene 3
20112913625 112913729 + GC01P112917



21112913626 112913729 + ENSG00000238761
Exon structure


ENSG00000238761
22112935045 112935512 + GC01P112935



23112938881 112941439 + GC01P112942



24112957339 112958909 - GC01M112958



25112938800 113006078 + CTTNBP2NL
Exon structure
Hs.744100 55917 ENSG00000143079 CTTNBP2 N-terminal like
26112999440 113006078 + GC01P113001



27113004392 113004455 - MIR4256
Exon structure

100422976
microRNA 4256
28113009163 113072787 + WNT2B
Exon structure
Hs.258575 7482 ENSG00000134245 wingless-type MMTV integration site family, member 2B
29113041688 113042948 + GC01P113044



30113057150 113057167 + GC01P113057



31113058876 113058904 + PIR49036
Exon structure




32113058951 113058978 + PIR45276
Exon structure




33113060421 113061063 - ENSG00000273483
Exon structure


ENSG00000273483
34113065464 113065490 + PIR48285
Exon structure




35113065955 113065983 + PIR39607
Exon structure




36113066431 113066460 - PIR46396
Exon structure




37113067188 113067216 - PIR60205
Exon structure




38113067658 113067689 + GC01P113077



39113067658 113067689 + PIR51209
Exon structure




40113068317 113068345 + PIR56002
Exon structure




41113068619 113068645 + PIR39876
Exon structure




42113070137 113070282 + GC01P113076



43113066140 113163447 - ST7L
Exon structure
Hs.201921 54879 ENSG00000007341 suppression of tumorigenicity 7 like
44113153595 113153624 - PIR33611
Exon structure




45113168494 113168847 - MRPL53P1
Exon structure

359752 ENSG00000235299 mitochondrial ribosomal protein L53 pseudogene 1
46113177344 113177393 - GC01M113180



47113177341 113177406 - RNU7-70P
Exon structure

100151667 ENSG00000252750 RNA, U7 small nuclear 70 pseudogene
48113162427 113192635 + GC01P113162



49113161795 113214241 + CAPZA1
Exon structure
Hs.744974 829 ENSG00000116489 capping protein (actin filament) muscle Z-line, alpha 1
50113195210 113195310 + ENSG00000238975
Exon structure


ENSG00000238975
51113194172 113222016 + GC01P113198



52113209542 113212216 + GC01P113209



53113213935 113214234 + GC01P113218



54113215763 113217505 + GC01P113219



55113215763 113243368 + MOV10
Exon structure
Hs.514941 4343 ENSG00000155363 Mov10, Moloney leukemia virus 10, homolog (mouse)
56113236527 113237206 + GC01P113236



57113236310 113239243 - ENSG00000225075
Exon structure


ENSG00000225075
58113240930 113241597 + GC01P113240



59113246316 113246342 - PIR32287
Exon structure




60113246326 113246354 - PIR38214
Exon structure




61113243728 113250056 - RHOC
Exon structure
Hs.658289; Hs.502659 389 ENSG00000155366 ras homolog family member C
62113247262 113249749 - GC01M113251



63113245236 113254055 - ENSG00000271810
Exon structure


ENSG00000271810
64113252616 113258099 - PPM1J
Exon structure
Hs.655231 333926 ENSG00000155367 protein phosphatase, Mg2+/Mn2+ dependent, 1J
65113256856 113257950 - GC01M113256



66113258294 113260418 + ENSG00000261595
Exon structure


ENSG00000261595
67113263041 113269857 + FAM19A3
Exon structure
Hs.439116 284467 ENSG00000184599 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3
68113290717 113291097 + LOC128322
Exon structure

128322 ENSG00000234790
69113294890 113295200 - GC01M113298



70113362647 113363601 + GC01P113362



71113352398 113391200 + GC01P113356



72113362792 113393265 - RP11-426L16.8
Exon structure

100996702 ENSG00000215866
73113399850 113401156 + GC01P113399



74113392650 113420493 + ENSG00000224167
Exon structure


ENSG00000224167
75113433214 113433593 - RPL39P8
Exon structure

100270893 ENSG00000228040 ribosomal protein L39 pseudogene 8
76113441530 113441559 - GC01M113441



77113441839 113441868 - GC01M113442



78113460640 113465014 - GC01M113460



79113465972 113467295 + AKR7A2P1
Exon structure
Hs.647691 246182 ENSG00000229020 aldo-keto reductase family 7, member A2 pseudogene 1
80113454469 113499635 - SLC16A1
Exon structure
Hs.75231 6566 ENSG00000155380 solute carrier family 16 (monocarboxylate transporter), member 1
81113471670 113498804 - GC01M113477



82113471942 113498804 - GC01M113478



83113499020 113542118 + SLC16A1-AS1
Exon structure
Hs.418285 100506392 ENSG00000226419 SLC16A1 antisense RNA 1
84113523380 113524097 - GC01M113524



85113499036 113550270 + GC01P113503



86113550876 113589677 + ENSG00000236066
Exon structure


ENSG00000236066
87113577443 113580582 + GC01P113577



88113554309 113615727 - RP11-31F15.2
Exon structure
Hs.382067 100996251 ENSG00000238198 Uncharacterized LOC100996251 (est)
89113611502 113611531 + GC01P113611



90113605100 113624622 + PIRC4
Exon structure

100313807
piwi-interacting RNA cluster 4
91113615831 113674882 + LRIG2
Exon structure
Hs.448972 9860 ENSG00000198799 leucine-rich repeats and immunoglobulin-like domains 2
92113641345 113650448 + GC01P113641



93113668562 113668588 + PIR41123
Exon structure




94113667943 113669577 - RLIMP2
Exon structure

100533731 ENSG00000237278 ring finger protein, LIM domain interacting pseudogene 2
95113673733 113674746 + GC01P113676



96113711611 113712051 + RPS19P2
Exon structure

85487 ENSG00000233839 ribosomal protein S19 pseudogene 2
97113741429 113741913 + RPS15P1
Exon structure

728428 ENSG00000236887 ribosomal protein S15 pseudogene 1
98113739403 113748875 - LOC643441
Exon structure
Hs.124895 643441
Uncharacterized LOC643441 (est)
99113798253 113798280 - PIR44366
Exon structure




100113933883 113947077 + GC01P113934



101113992322 113993350 + LOC100421402
Exon structure

100421402 ENSG00000232499
102113933371 114228545 + MAGI3
Exon structure
Hs.486189 260425 ENSG00000081026 membrane associated guanylate kinase, WW and PDZ domain containing 3
103114119379 114119521 - MTND5P20
Exon structure

100873269 ENSG00000238256 MT-ND5 pseudogene 20
104114241506 114242253 - RPS2P14
Exon structure

100270827 ENSG00000232450 ribosomal protein S2 pseudogene 14
105114242497 114248603 - GC01M114243



106114239453 114302111 - PHTF1
Exon structure
Hs.655824 10745 ENSG00000116793 putative homeodomain transcription factor 1
107114267957 114281408 - GC01M114268



108114292144 114302111 - GC01M114292



109114304454 114307432 - GC01M114309



110114308880 114308908 - PIR59903
Exon structure




111114304454 114355098 - RSBN1
Exon structure
Hs.486285 54665 ENSG00000081019 round spermatid basic protein 1
112114357286 114362454 - GC01M114357



113114355001 114371793 + ENSG00000231128
Exon structure


ENSG00000231128
114114356433 114414381 - PTPN22
Exon structure
Hs.535276 26191 ENSG00000134242 protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
115114397113 114399063 - GC01M114403



116114397115 114399067 - GC01M114404



117114399257 114443859 + AP4B1-AS1
Exon structure
Hs.664669 100287722 ENSG00000226167 AP4B1 antisense RNA 1
118114419436 114430169 - BCL2L15
Exon structure
Hs.123106 440603 ENSG00000188761 BCL2-like 15
119114420790 114430081 - GC01M114423



120114441750 114442630 - GC01M114441



121114437370 114447823 - AP4B1
Exon structure
Hs.515048 10717 ENSG00000134262 adaptor-related protein complex 4, beta 1 subunit
122114447763 114456708 + DCLRE1B
Exon structure
Hs.591412 64858 ENSG00000118655 DNA cross-link repair 1B
123114455536 114456662 + GC01P114462



124114455536 114456662 + GC01P114463



125114466622 114472114 - RP5-1073O3.7
Exon structure

101928846 ENSG00000235527
126114492434 114492465 + GC01P114492



127114471814 114520491 + HIPK1
Exon structure
Hs.532363 204851 ENSG00000163349 homeodomain interacting protein kinase 1
128114522030 114524876 + OLFML3
Exon structure
Hs.9315 56944 ENSG00000116774 olfactomedin-like 3
129114544055 114545965 - RPL13AP10
Exon structure

100132906 ENSG00000270780 ribosomal protein L13a pseudogene 10
130114557425 114574814 - GC01M114559



131114574961 114578381 + GC01P114575



132114631913 114696541 - SYT6
Exon structure
Hs.370963 148281 ENSG00000134207 synaptotagmin VI
133114520925 114937612 - GC01M114523



134114749049 114804900 - ENSG00000232895
Exon structure


ENSG00000232895
135114749049 114804900 + GC01P114751



136114821624 114821908 - MRPL57P1
Exon structure

126581
mitochondrial ribosomal protein L57 pseudogene 1
137114896608 114897800 + LOC100421116
Exon structure

100421116 ENSG00000271419
138114906984 114907014 - GC01M114908



139114906984 114907014 - PIR60434
Exon structure




140114925931 114930274 + GC01P114925



141114938880 114942231 - GC01M114938



142114935399 115053781 - TRIM33
Exon structure
Hs.26837 51592 ENSG00000197323 tripartite motif containing 33
143115002456 115002982 + RPL26P10
Exon structure

100270886 ENSG00000226984 ribosomal protein L26 pseudogene 10
144115010740 115012266 + EIF2S2P5
Exon structure

347675 ENSG00000225650 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 5
145115033345 115033452 + GC01P115036



146115033346 115033454 + ENSG00000201114
Exon structure


ENSG00000201114
147115078592 115080461 + PKMP1
Exon structure

643586 ENSG00000236480 pyruvate kinase, muscle pseudogene 1
148115078491 115087734 - GC01M115078



149115110178 115124265 - BCAS2
Exon structure
Hs.22960 10286 ENSG00000116752 breast carcinoma amplified sequence 2
150115124543 115129514 + GC01P115124



151115125469 115213043 - DENND2C
Exon structure
Hs.654928 163259 ENSG00000175984 DENN/MADD domain containing 2C
152115215719 115238239 - AMPD1
Exon structure
Hs.89570 270 ENSG00000116748 adenosine monophosphate deaminase 1
153115240250 115240545 - RN7SL432P
Exon structure

hugo1209 ENSG00000242769 RNA, 7SL, cytoplasmic 432, pseudogene
154115247085 115259515 - NRAS
Exon structure
Hs.486502 4893 ENSG00000213281 neuroblastoma RAS viral (v-ras) oncogene homolog
155115260423 115261559 - GC01M115260



156115270340 115270446 + GC01P115273



157115270341 115270445 + ENSG00000201900
Exon structure


ENSG00000201900
158115272942 115272971 - PIR36434
Exon structure




159115277112 115277138 - PIR47219
Exon structure




160115259534 115301297 - CSDE1
Exon structure
Hs.69855 7812 ENSG00000009307 cold shock domain containing E1, RNA-binding
161115292577 115292608 - PIR52575
Exon structure




162115292577 115292608 - GC01M115294



163115290938 115300608 - GC01M115290



164115312100 115323308 - SIKE1
Exon structure
Hs.709277 80143 ENSG00000052723 suppressor of IKBKE 1
165115342194 115342225 + GC01P115342



166115347512 115347541 - GC01M115347



167115347883 115347915 + GC01P115347



168115379848 115394074 + GC01P115380



169115377334 115397515 + NR1H5P
Exon structure

643609 ENSG00000227970 nuclear receptor subfamily 1, group H, member 5, pseudogene
170115401171 115419503 + GC01P115402



171115397424 115537991 + SYCP1
Exon structure
Hs.112743 6847 ENSG00000198765 synaptonemal complex protein 1
172115452700 115487568 + GC01P115452



173115520178 115537975 + GC01P115520



174115555186 115555217 + GC01P115555



175115572415 115576941 + TSHB
Exon structure
Hs.406687 7252 ENSG00000134200 thyroid stimulating hormone, beta
176115593066 115601046 - GC01M115593



177115590632 115632121 - TSPAN2
Exon structure
Hs.310458 10100 ENSG00000134198 tetraspanin 2
178115642293 115645279 + ENSG00000233730
Exon structure


ENSG00000233730
179115724043 115765741 + GC01P115724



180115813553 115819102 - GC01M115814



181115828537 115880857 - NGF
Exon structure
Hs.2561 4803 ENSG00000134259 nerve growth factor (beta polypeptide)
182115825655 115910693 + ENSG00000228035
Exon structure


ENSG00000228035
183116014562 116018648 + ENSG00000226973
Exon structure


ENSG00000226973
184116028272 116028364 + ENSG00000265534
Exon structure


ENSG00000265534
185116066315 116066341 + PIR61717
Exon structure




186116099366 116100096 + TCEB1P20
Exon structure

100287778 ENSG00000229101 transcription elongation factor B (SIII), polypeptide 1 pseudogene 20
187116107003 116108053 + CNOT7P2
Exon structure

100132332 ENSG00000232185 CCR4-NOT transcription complex, subunit 7 pseudogene 2
188116119847 116120407 - LOC100287840
Exon structure

100287840 ENSG00000270631
189116137955 116137982 - PIR48206
Exon structure




190116149092 116149390 + RN7SL420P
Exon structure

hugo1197 ENSG00000239984 RNA, 7SL, cytoplasmic 420, pseudogene
191116164492 116164626 - GC01M116167



192116164493 116164626 - ENSG00000207502
Exon structure


ENSG00000207502
193116184574 116240845 + VANGL1
Exon structure
Hs.515130 81839 ENSG00000173218 VANGL planar cell polarity protein 1
194116269646 116275548 - GC01M116269



195116242624 116311426 - CASQ2
Exon structure
Hs.57975 845 ENSG00000118729 calsequestrin 2 (cardiac muscle)
196116370142 116370341 + GC01P116373



197116378998 116386538 - NHLH2
Exon structure
Hs.46296 4808 ENSG00000177551 nescient helix loop helix 2
198116380467 116386538 + GC01P116387



199116383626 116383862 + GC01P116386



200116399531 116400440 - HNRNPA1P43
Exon structure

400769 ENSG00000214204 heterogeneous nuclear ribonucleoprotein A1 pseudogene 43